miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39608_ppt-MIR1033a:mirbase
Length = 119
Score = 236 bits (119), Expect = 3e-63
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 tgatcagatacaatccggcggtggcattgggaatgtccatcacaacctgccaacattcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgatcagatacaatccggcggtggcattgggaatgtccatcacaacctgccaacattcca 60
Query: 61 ggttatgttgacgggtcgtgatgggcactctcagcgtctcatgtcacaaaaacgcagac 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggttatgttgacgggtcgtgatgggcactctcagcgtctcatgtcacaaaaacgcagac 119
>39612_ppt-MIR1033e:mirbase
Length = 119
Score = 129 bits (65), Expect = 5e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 27 ttgggaatgtccatcacaacctgccaacattccaggttatgttgacgggtcgtgatgggc 86
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 27 ttgggaatgtccagcacaacctgtcaacattccaggttatgttgacgggtcgtgatgggc 86
Query: 87 actctcagcgtctcatg 103
|||||||||||| ||||
Sbjct: 87 actctcagcgtcccatg 103
>39611_ppt-MIR1033d:mirbase
Length = 119
Score = 103 bits (52), Expect = 3e-23
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 24 gcattgggaatgtccatcacaacctgccaacattccaggttatgttgacgggtcgtgatg 83
||||||||||||||||| || | ||| ||||||| |||||||||||||||||||||||||
Sbjct: 24 gcattgggaatgtccatgacgatctgtcaacatttcaggttatgttgacgggtcgtgatg 83
Query: 84 ggcactctcagcgtctcatg 103
|||||||||| ||||||||
Sbjct: 84 ggcactctcactgtctcatg 103
>39610_ppt-MIR1033c:mirbase
Length = 119
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 51 caacattccaggttatgttgacgggtcgtgatgggcactctca 93
|||||||| | ||||| ||||||||||||||||||||||||||
Sbjct: 51 caacattctatgttatattgacgggtcgtgatgggcactctca 93
>39609_ppt-MIR1033b:mirbase
Length = 119
Score = 54.0 bits (27), Expect = 2e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 51 caacattccaggttatgttgacgggtcgtgatgggcactctca 93
|||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 51 caacattctagagtatattgacgggtcgtgatgggcactctca 93
