miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39612_ppt-MIR1033e:mirbase
Length = 119
Score = 236 bits (119), Expect = 3e-63
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 gactaagataacattcggcaggggtgttgggaatgtccagcacaacctgtcaacattcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gactaagataacattcggcaggggtgttgggaatgtccagcacaacctgtcaacattcca 60
Query: 61 ggttatgttgacgggtcgtgatgggcactctcagcgtcccatgcccaaactgcacatca 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggttatgttgacgggtcgtgatgggcactctcagcgtcccatgcccaaactgcacatca 119
>39608_ppt-MIR1033a:mirbase
Length = 119
Score = 129 bits (65), Expect = 5e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 27 ttgggaatgtccagcacaacctgtcaacattccaggttatgttgacgggtcgtgatgggc 86
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 27 ttgggaatgtccatcacaacctgccaacattccaggttatgttgacgggtcgtgatgggc 86
Query: 87 actctcagcgtcccatg 103
|||||||||||| ||||
Sbjct: 87 actctcagcgtctcatg 103
>39611_ppt-MIR1033d:mirbase
Length = 119
Score = 93.7 bits (47), Expect = 3e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 27 ttgggaatgtccagcacaacctgtcaacattccaggttatgttgacgggtcgtgatgggc 86
||||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 27 ttgggaatgtccatgacgatctgtcaacatttcaggttatgttgacgggtcgtgatgggc 86
Query: 87 actctca 93
|||||||
Sbjct: 87 actctca 93
>39610_ppt-MIR1033c:mirbase
Length = 119
Score = 73.8 bits (37), Expect = 3e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 25 tgttgggaatgtccagcacaacctgtcaacattccaggttatgttgacgggtcgtgatgg 84
||||||| ||| ||| ||| | |||||||||||| | ||||| |||||||||||||||||
Sbjct: 25 tgttgggcatgcccaacacgatctgtcaacattctatgttatattgacgggtcgtgatgg 84
Query: 85 gcactctca 93
|||||||||
Sbjct: 85 gcactctca 93
>39609_ppt-MIR1033b:mirbase
Length = 119
Score = 61.9 bits (31), Expect = 1e-10
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 47 ctgtcaacattccaggttatgttgacgggtcgtgatgggcactctca 93
|||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 47 ctgtcaacattctagagtatattgacgggtcgtgatgggcactctca 93
