miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;AAHX01006722.1/12190-12258 10116:Rattus
norvegicus (Norway rat)
Length = 69
Score = 83.8 bits (42), Expect = 4e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 22 tggaaacatttctgcacaaactagatgttgatgccagtgtgcggaaatgcttttgctaca 81
|||||||| ||||||||||||| ||| ||||||||||||||| ||||||||| |||||||
Sbjct: 8 tggaaacacttctgcacaaactcgattttgatgccagtgtgcagaaatgcttctgctaca 67
Query: 82 tt 83
||
Sbjct: 68 tt 69
>RF00693;mir-147;AAFC03018591.1/6229-6298 9913:Bos taurus (cattle)
Length = 70
Score = 54.0 bits (27), Expect = 3e-07
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 22 tggaaacatttctgcacaaactaga-tgttgatgccagtgtgcggaaatgcttttgctac 80
|||||||||||||||||||||| || | | ||| ||| ||||| |||||||||||||||
Sbjct: 8 tggaaacatttctgcacaaactcgattatggataccaatgtgccaaaatgcttttgctac 67
Query: 81 att 83
|||
Sbjct: 68 att 70
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 52.0 bits (26), Expect = 1e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 22 tggaaacatttctgcacaaactagatgttgatgccagtgtgcggaaatgcttttgctaca 81
|||||||| ||||||||||||||||| || |||||||||||| ||||| |||||||
Sbjct: 8 tggaaacacttctgcacaaactagattatggatacagtgtgcggaagtgcttctgctaca 67
Query: 82 tt 83
||
Sbjct: 68 tt 69
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 56 cagtgtgcggaaatgcttttgctacatt 83
|||||||||||||||||| |||||||||
Sbjct: 43 cagtgtgcggaaatgcttctgctacatt 70
>RF00693;mir-147;AANG01714059.1/489-419 9685:Felis catus (domestic
cat)
Length = 71
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 aaacatttctgcacaaactagat 47
|||||||||||||||||||||||
Sbjct: 11 aaacatttctgcacaaactagat 33
>RF00693;mir-147;AAEX02028076.1/21466-21402 9615:Canis lupus
familiaris (dog)
Length = 65
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tggaaacatttctgcacaaacta 44
|||||||||||||||||||||||
Sbjct: 8 tggaaacatttctgcacaaacta 30
>RF00693;mir-147;ABQO010681913.1/1802-1733 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 tggaaacatttctgcacaaactagat 47
|||||||||||||||||| |||||||
Sbjct: 8 tggaaacatttctgcacagactagat 33
>RF00693;mir-147;ABRN01368247.1/244-313 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 tggaaacatttctgcacaaactagat 47
|||||||||||||||||||| |||||
Sbjct: 8 tggaaacatttctgcacaaagtagat 33
>RF00693;mir-147;AANG01591628.1/889-825 9685:Felis catus (domestic
cat)
Length = 65
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 ggaaacatttctgcacaaacta 44
||||||||||||||||||||||
Sbjct: 9 ggaaacatttctgcacaaacta 30
