miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39417_pta-MIR159a:mirbase
Length = 210
Score = 416 bits (210), Expect = e-117
Identities = 210/210 (100%)
Strand = Plus / Plus
Query: 1 gatgtgttggagctcccttcagtccaaccaaagcttgtgcagcggtggttcagctgctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgtgttggagctcccttcagtccaaccaaagcttgtgcagcggtggttcagctgctga 60
Query: 61 ttcatgcattctacttccctgtccgtgactctccagcagcctgaacaaatcaatcaatcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcatgcattctacttccctgtccgtgactctccagcagcctgaacaaatcaatcaatcg 120
Query: 121 acctgcatgacaggatagtggtgtgcatgacgcaggagatgtactgtcactaaacacgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acctgcatgacaggatagtggtgtgcatgacgcaggagatgtactgtcactaaacacgca 180
Query: 181 tttcttggattgaagggagctccacttatc 210
||||||||||||||||||||||||||||||
Sbjct: 181 tttcttggattgaagggagctccacttatc 210
>39424_pta-MIR319:mirbase
Length = 206
Score = 408 bits (206), Expect = e-115
Identities = 206/206 (100%)
Strand = Plus / Minus
Query: 5 tgttggagctcccttcagtccaaccaaagcttgtgcagcggtggttcagctgctgattca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tgttggagctcccttcagtccaaccaaagcttgtgcagcggtggttcagctgctgattca 147
Query: 65 tgcattctacttccctgtccgtgactctccagcagcctgaacaaatcaatcaatcgacct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tgcattctacttccctgtccgtgactctccagcagcctgaacaaatcaatcaatcgacct 87
Query: 125 gcatgacaggatagtggtgtgcatgacgcaggagatgtactgtcactaaacacgcatttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 gcatgacaggatagtggtgtgcatgacgcaggagatgtactgtcactaaacacgcatttc 27
Query: 185 ttggattgaagggagctccacttatc 210
||||||||||||||||||||||||||
Sbjct: 26 ttggattgaagggagctccacttatc 1
>41302_ptc-MIR159d:mirbase
Length = 194
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 181 tttcttggattgaagggagctcc 203
|||||||||||||||||||||||
Sbjct: 162 tttcttggattgaagggagctcc 184
>41919_osa-MIR159c:mirbase
Length = 197
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 185 ttggattgaagggagctccac 205
|||||||||||||||||||||
Sbjct: 168 ttggattgaagggagctccac 188
>40703_mtr-MIR319:mirbase
Length = 207
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 9 ggagctcccttcagtccaaccaaag 33
||||||||||||||||||| |||||
Sbjct: 187 ggagctcccttcagtccaagcaaag 163
>40069_ath-MIR319a:mirbase
Length = 176
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 9 ggagctcccttcagtccaaccaaag 33
||||||||||||||||||| |||||
Sbjct: 172 ggagctcccttcagtccaatcaaag 148
>39858_aly-MIR319a:mirbase
Length = 221
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 9 ggagctcccttcagtccaaccaaag 33
||||||||||||||||||| |||||
Sbjct: 195 ggagctcccttcagtccaatcaaag 171
>42693_zma-MIR159d:mirbase
Length = 217
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 cttggattgaagggagctcc 203
||||||||||||||||||||
Sbjct: 178 cttggattgaagggagctcc 197
>42692_zma-MIR159c:mirbase
Length = 217
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 cttggattgaagggagctcc 203
||||||||||||||||||||
Sbjct: 178 cttggattgaagggagctcc 197
>42495_sbi-MIR159b:mirbase
Length = 253
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 cttggattgaagggagctcc 203
||||||||||||||||||||
Sbjct: 214 cttggattgaagggagctcc 233
>42454_sof-MIR159c:mirbase
Length = 238
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 cttggattgaagggagctcc 203
||||||||||||||||||||
Sbjct: 199 cttggattgaagggagctcc 218
>41528_sly-MIR159:mirbase
Length = 177
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 179 catttcttggattgaagggagctc 202
||||| ||||||||||||||||||
Sbjct: 152 cattttttggattgaagggagctc 175
>39730_smo-MIR159:mirbase
Length = 279
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 cttggattgaagggagctcc 203
||||||||||||||||||||
Sbjct: 249 cttggattgaagggagctcc 268
>39480_ppt-MIR319a:mirbase
Length = 169
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 8 tggagctcccttcagtccaa 27
||||||||||||||||||||
Sbjct: 168 tggagctcccttcagtccaa 149
>39419_pta-MIR159c:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 cttggattgaagggagctcc 203
||||||||||||||||||||
Sbjct: 49 cttggattgaagggagctcc 68
