miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 88 tgtcggaccaggcttcattcccctca 113
||||||||||||||||||||||||||
Sbjct: 71 tgtcggaccaggcttcattcccctca 96
>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana (thale
cress)
Length = 101
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 88 tgtcggaccaggcttcattcccctca 113
||||||||||||||||||||||||||
Sbjct: 74 tgtcggaccaggcttcattcccctca 99
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 gtcggaccaggcttcattcccctca 113
|||||||||||||||||||||||||
Sbjct: 96 gtcggaccaggcttcattcccctca 120
>RF00075;mir-166;AC189591.2/50508-50400 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 gtcggaccaggcttcattcccctca 113
|||||||||||||||||||||||||
Sbjct: 83 gtcggaccaggcttcattcccctca 107
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 gtcggaccaggcttcattcccctca 113
|||||||||||||||||||||||||
Sbjct: 119 gtcggaccaggcttcattcccctca 143
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 100 tcggaccaggcttcattcccctca 123
>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
(papaya)
Length = 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 75 tcggaccaggcttcattcccctca 98
>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 75 tcggaccaggcttcattcccctca 98
>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus trichocarpa
Length = 88
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 63 tcggaccaggcttcattcccctca 86
>RF00075;mir-166;AARH01009662.1/134102-134198 3694:Populus
trichocarpa
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 72 tcggaccaggcttcattcccctca 95
>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
Length = 96
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 71 tcggaccaggcttcattcccctca 94
>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 69 tcggaccaggcttcattcccctca 92
>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 81 tcggaccaggcttcattcccctca 104
>RF00075;mir-166;CU302248.6/62232-62044 3880:Medicago truncatula
(barrel medic)
Length = 189
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 164 tcggaccaggcttcattcccctca 187
>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
Length = 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 98 tcggaccaggcttcattcccctca 121
>RF00075;mir-166;BABK01039514.1/607-703 34305:Lotus japonicus
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 72 tcggaccaggcttcattcccctca 95
>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
Length = 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 65 tcggaccaggcttcattcccctca 88
>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
Length = 157
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 132 tcggaccaggcttcattcccctca 155
>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
Length = 150
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 125 tcggaccaggcttcattcccctca 148
>RF00075;mir-166;AM485267.2/15969-16057 29760:Vitis vinifera
Length = 89
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 86 ggtgtcggaccaggcttcattcccctca 113
||||||||||||||||||||||| ||||
Sbjct: 60 ggtgtcggaccaggcttcattcctctca 87
>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
Length = 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 65 tcggaccaggcttcattcccctca 88
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 94 tcggaccaggcttcattcccctca 117
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 89 tcggaccaggcttcattcccctca 112
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 72 tcggaccaggcttcattcccctca 95
>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
Length = 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 99 tcggaccaggcttcattcccctca 122
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 93 tcggaccaggcttcattcccctca 116
>RF00075;mir-166;ABXC01000331.1/255164-255261 4558:Sorghum bicolor
(sorghum)
Length = 98
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 73 tcggaccaggcttcattcccctca 96
>RF00075;mir-166;ABXC01000758.1/126828-126715 4558:Sorghum bicolor
(sorghum)
Length = 114
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 89 tcggaccaggcttcattcccctca 112
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 72 tcggaccaggcttcattcccctca 95
>RF00075;mir-166;AC027660.2/136704-136618 39947:Oryza sativa
Japonica Group
Length = 87
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 62 tcggaccaggcttcattcccctca 85
>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
Indica Group
Length = 87
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 62 tcggaccaggcttcattcccctca 85
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 96 tcggaccaggcttcattcccctca 119
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 78 tcggaccaggcttcattcccctca 101
>RF00075;mir-166;ABEU01002487.1/1609-1703 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 70 tcggaccaggcttcattcccctca 93
>RF00075;mir-166;ABEU01002053.1/8010-8104 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 70 tcggaccaggcttcattcccctca 93
>RF00075;mir-166;ABEU01003209.1/178750-178656 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 70 tcggaccaggcttcattcccctca 93
>RF00075;mir-166;ABEU01002839.1/114707-114612 145481:Physcomitrella
patens subsp. patens
Length = 96
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 71 tcggaccaggcttcattcccctca 94
>RF00075;mir-166;ABEU01001509.1/37358-37431 145481:Physcomitrella
patens subsp. patens
Length = 74
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctca 113
||||||||||||||||||||||||
Sbjct: 49 tcggaccaggcttcattcccctca 72
>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
trichocarpa
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tgtcggaccaggcttcattcccc 110
|||||||||||||||||||||||
Sbjct: 107 tgtcggaccaggcttcattcccc 129
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tgtcggaccaggcttcattcccc 110
|||||||||||||||||||||||
Sbjct: 128 tgtcggaccaggcttcattcccc 150
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tgtcggaccaggcttcattcccc 110
|||||||||||||||||||||||
Sbjct: 86 tgtcggaccaggcttcattcccc 108
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tgtcggaccaggcttcattcccc 110
|||||||||||||||||||||||
Sbjct: 121 tgtcggaccaggcttcattcccc 143
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tgtcggaccaggcttcattcccc 110
|||||||||||||||||||||||
Sbjct: 160 tgtcggaccaggcttcattcccc 182
>RF00075;mir-166;ABXC01000715.1/152379-152276 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 84 atggtgtcggaccaggcttcattcccc 110
||||| |||||||||||||||||||||
Sbjct: 73 atggtttcggaccaggcttcattcccc 99
>RF00075;mir-166;ABEU01001509.1/36651-36730 145481:Physcomitrella
patens subsp. patens
Length = 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctc 112
|||||||||||||||||||||||
Sbjct: 55 tcggaccaggcttcattcccctc 77
>RF00075;mir-166;ABEU01001509.1/36829-36913 145481:Physcomitrella
patens subsp. patens
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccctc 112
|||||||||||||||||||||||
Sbjct: 60 tcggaccaggcttcattcccctc 82
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 gtcggaccaggcttcattcccc 110
||||||||||||||||||||||
Sbjct: 110 gtcggaccaggcttcattcccc 131
>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
cress)
Length = 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 gtcggaccaggcttcattcccc 110
||||||||||||||||||||||
Sbjct: 96 gtcggaccaggcttcattcccc 117
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus trichocarpa
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 gtcggaccaggcttcattcccc 110
||||||||||||||||||||||
Sbjct: 99 gtcggaccaggcttcattcccc 120
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 gtcggaccaggcttcattcccc 110
||||||||||||||||||||||
Sbjct: 95 gtcggaccaggcttcattcccc 116
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 gtcggaccaggcttcattcccc 110
||||||||||||||||||||||
Sbjct: 107 gtcggaccaggcttcattcccc 128
>RF00075;mir-166;AASG02003407.1/927-777 3988:Ricinus communis
(castor bean)
Length = 151
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccct 111
||||||||||||||||||||||
Sbjct: 126 tcggaccaggcttcattcccct 147
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 gtcggaccaggcttcattcccc 110
||||||||||||||||||||||
Sbjct: 130 gtcggaccaggcttcattcccc 151
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 gtcggaccaggcttcattcccc 110
||||||||||||||||||||||
Sbjct: 124 gtcggaccaggcttcattcccc 145
>RF00075;mir-166;ABEU01015165.1/9230-9152 145481:Physcomitrella
patens subsp. patens
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccct 111
||||||||||||||||||||||
Sbjct: 54 tcggaccaggcttcattcccct 75
>RF00075;mir-166;ABEU01008046.1/36531-36607 145481:Physcomitrella
patens subsp. patens
Length = 77
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tcggaccaggcttcattcccct 111
||||||||||||||||||||||
Sbjct: 52 tcggaccaggcttcattcccct 73
>RF00075;mir-166;ABEU01008046.1/36699-36780 145481:Physcomitrella
patens subsp. patens
Length = 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 91 cggaccaggcttcattcccctc 112
||||||||||||||||||||||
Sbjct: 58 cggaccaggcttcattcccctc 79
>RF00075;mir-166;ABEU01005077.1/22634-22717 145481:Physcomitrella
patens subsp. patens
Length = 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 91 cggaccaggcttcattcccctc 112
||||||||||||||||||||||
Sbjct: 60 cggaccaggcttcattcccctc 81
