miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>39426_pta-MIR396:mirbase
          Length = 119

 Score =  236 bits (119), Expect = 3e-63
 Identities = 119/119 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatcttgtcatacttttccacagctttcttgaactttacgtgtacgggacgaggagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaatcttgtcatacttttccacagctttcttgaactttacgtgtacgggacgaggagatt 60

                                                                      
Query: 61  ctgatttctacgtctgcgattaaagttcaagaaaactgtgggaaagcatggtaggattc 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctgatttctacgtctgcgattaaagttcaagaaaactgtgggaaagcatggtaggattc 119




>40086_ath-MIR396b:mirbase
          Length = 135

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 8  gtcatacttttccacagctttcttgaacttt 38
          |||||||||||||||||||||||||||||||
Sbjct: 2  gtcatacttttccacagctttcttgaacttt 32




>39878_aly-MIR396b:mirbase
          Length = 188

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 8  gtcatacttttccacagctttcttgaacttt 38
          |||||| ||||||||||||||||||||||||
Sbjct: 23 gtcatatttttccacagctttcttgaacttt 53




>41660_vvi-MIR396a:mirbase
          Length = 116

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 7  tgtcatacttttccacagctttcttgaact 36
          |||||| |||||||||||||||||||||||
Sbjct: 4  tgtcatgcttttccacagctttcttgaact 33




>41439_ptc-MIR396e:mirbase
          Length = 145

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 8  gtcatacttttccacagctttcttgaactt 37
          ||||| ||||||||||||||||||||||||
Sbjct: 2  gtcatgcttttccacagctttcttgaactt 31



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 83  aagttcaagaaaactgtgggaaagcatg 110
           |||||||||||| |||||| ||||||||
Sbjct: 31  aagttcaagaaagctgtggaaaagcatg 4




>41438_ptc-MIR396d:mirbase
          Length = 154

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 8  gtcatacttttccacagctttcttgaactt 37
          ||||| ||||||||||||||||||||||||
Sbjct: 2  gtcatgcttttccacagctttcttgaactt 31



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 83  aagttcaagaaaactgtgggaaagcatg 110
           |||||||||||| |||||| ||||||||
Sbjct: 31  aagttcaagaaagctgtggaaaagcatg 4




>41212_ccl-MIR396:mirbase
          Length = 277

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 8   gtcatacttttccacagctttcttgaactt 37
           ||||| ||||||||||||||||||||||||
Sbjct: 134 gtcatgcttttccacagctttcttgaactt 163



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 83  aagttcaagaaaactgtgggaaagcatg 110
           |||||||||||| |||||| ||||||||
Sbjct: 163 aagttcaagaaagctgtggaaaagcatg 136




>40476_gma-MIR396d:mirbase
          Length = 108

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 8  gtcatacttttccacagctttcttgaactt 37
          ||||| ||||||||||||||||||||||||
Sbjct: 2  gtcatgcttttccacagctttcttgaactt 31



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 83  aagttcaagaaaactgtgggaaagcatg 110
           |||||||||||| |||||| ||||||||
Sbjct: 31  aagttcaagaaagctgtggaaaagcatg 4




>40474_gma-MIR396b:mirbase
          Length = 126

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 8  gtcatacttttccacagctttcttgaactt 37
          ||||| ||||||||||||||||||||||||
Sbjct: 12 gtcatgcttttccacagctttcttgaactt 41



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 83  aagttcaagaaaactgtgggaaagcatg 110
           |||||||||||| |||||| ||||||||
Sbjct: 41  aagttcaagaaagctgtggaaaagcatg 14




>41140_tcc-MIR396c:mirbase
          Length = 152

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 cttttccacagctttcttgaacttt 38
          |||||||||||||||||||||||||
Sbjct: 18 cttttccacagctttcttgaacttt 42



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 82  aaagttcaagaaaactgtgggaaagcatgg 111
           ||||||||||||| |||||| |||||||||
Sbjct: 42  aaagttcaagaaagctgtggaaaagcatgg 13




>41661_vvi-MIR396b:mirbase
          Length = 108

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 cttttccacagctttcttgaactt 37
          ||||||||||||||||||||||||
Sbjct: 11 cttttccacagctttcttgaactt 34



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 83  aagttcaagaaaactgtgggaaagcatggtagga 116
           |||||||||||| |||||| ||||||||| ||||
Sbjct: 34  aagttcaagaaagctgtggaaaagcatggcagga 1



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 83  aagttcaagaaaactgtgggaaagcatgg 111
           |||||||||||| |||||||||| |||||
Sbjct: 77  aagttcaagaaagctgtgggaaaccatgg 105




>40726_mtr-MIR396a:mirbase
          Length = 93

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 cttttccacagctttcttgaactt 37
          ||||||||||||||||||||||||
Sbjct: 3  cttttccacagctttcttgaactt 26




>40475_gma-MIR396c:mirbase
          Length = 117

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 cttttccacagctttcttgaactt 37
          ||||||||||||||||||||||||
Sbjct: 18 cttttccacagctttcttgaactt 41




>40379_rco-MIR396:mirbase
          Length = 124

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 cttttccacagctttcttgaactt 37
          ||||||||||||||||||||||||
Sbjct: 3  cttttccacagctttcttgaactt 26




>41437_ptc-MIR396c:mirbase
          Length = 102

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 15 ttttccacagctttcttgaactt 37
          |||||||||||||||||||||||
Sbjct: 9  ttttccacagctttcttgaactt 31




>41243_csi-MIR396c:mirbase
          Length = 178

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 15 ttttccacagctttcttgaactt 37
          |||||||||||||||||||||||
Sbjct: 11 ttttccacagctttcttgaactt 33




>41142_tcc-MIR396e:mirbase
          Length = 146

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 7   tgtcatacttttccacagctttcttgaactt 37
           |||||| ||||||||| ||||||||||||||
Sbjct: 134 tgtcatgcttttccacggctttcttgaactt 104



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 17 ttccacagctttcttgaactt 37
          |||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactt 41




>42812_zma-MIR396f:mirbase
          Length = 117

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 tttccacagctttcttgaactt 37
          ||||||||||||||||||||||
Sbjct: 1  tttccacagctttcttgaactt 22




>42811_zma-MIR396e:mirbase
          Length = 166

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 tttccacagctttcttgaactt 37
          ||||||||||||||||||||||
Sbjct: 1  tttccacagctttcttgaactt 22




>42584_sbi-MIR396c:mirbase
          Length = 162

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 tttccacagctttcttgaactt 37
          ||||||||||||||||||||||
Sbjct: 20 tttccacagctttcttgaactt 41




>42028_osa-MIR396c:mirbase
          Length = 141

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 tttccacagctttcttgaactt 37
          ||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaactt 31




>41795_bdi-MIR396e:mirbase
          Length = 201

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 tttccacagctttcttgaactt 37
          ||||||||||||||||||||||
Sbjct: 31 tttccacagctttcttgaactt 52




>41242_csi-MIR396b:mirbase
          Length = 134

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 ttttccacagctttcttgaact 36
          ||||||||||||||||||||||
Sbjct: 18 ttttccacagctttcttgaact 39




>41189_aqc-MIR396b:mirbase
          Length = 89

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 17 ttccacagctttcttgaacttt 38
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaacttt 22




>41138_tcc-MIR396a:mirbase
          Length = 146

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 ttttccacagctttcttgaact 36
          ||||||||||||||||||||||
Sbjct: 19 ttttccacagctttcttgaact 40




>40296_bna-MIR396a:mirbase
          Length = 117

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 17 ttccacagctttcttgaacttt 38
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaacttt 22




>39381_pab-MIR396c:mirbase
          Length = 143

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 9  tcatacttttccacagctttcttgaactt 37
          ||||| |||||||| ||||||||||||||
Sbjct: 17 tcatatttttccacggctttcttgaactt 45




>39380_pab-MIR396b:mirbase
          Length = 116

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 9  tcatacttttccacagctttcttgaactt 37
          ||||| |||||||| ||||||||||||||
Sbjct: 1  tcatagttttccacggctttcttgaactt 29




>42814_zma-MIR396h:mirbase
          Length = 124

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 98 ttccacagctttcttgaact 79




>42813_zma-MIR396g:mirbase
          Length = 114

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 17  ttccacagctttcttgaact 36
           ||||||||||||||||||||
Sbjct: 111 ttccacagctttcttgaact 92




>42808_zma-MIR396b:mirbase
          Length = 136

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>42807_zma-MIR396a:mirbase
          Length = 137

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>42583_sbi-MIR396b:mirbase
          Length = 128

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>42582_sbi-MIR396a:mirbase
          Length = 125

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>42472_ssp-MIR396:mirbase
          Length = 95

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>42461_sof-MIR396:mirbase
          Length = 134

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>42027_osa-MIR396b:mirbase
          Length = 116

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>42026_osa-MIR396a:mirbase
          Length = 154

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41794_bdi-MIR396d:mirbase
          Length = 152

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 33 ttccacagctttcttgaact 52




>41793_bdi-MIR396c:mirbase
          Length = 153

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 33 ttccacagctttcttgaact 52




>41663_vvi-MIR396d:mirbase
          Length = 120

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41662_vvi-MIR396c:mirbase
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41441_ptc-MIR396g:mirbase
          Length = 168

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 14 cttttccacagctttcttgaactt 37
          ||||||||| ||||||||||||||
Sbjct: 8  cttttccacggctttcttgaactt 31




>41436_ptc-MIR396b:mirbase
          Length = 132

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41435_ptc-MIR396a:mirbase
          Length = 123

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41241_csi-MIR396a:mirbase
          Length = 153

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 15  ttttccacagctttcttgaa 34
           ||||||||||||||||||||
Sbjct: 109 ttttccacagctttcttgaa 90




>41188_aqc-MIR396a:mirbase
          Length = 122

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>41141_tcc-MIR396d:mirbase
          Length = 182

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 14 cttttccacagctttcttgaactt 37
          ||||||||| ||||||||||||||
Sbjct: 18 cttttccacggctttcttgaactt 41




>41139_tcc-MIR396b:mirbase
          Length = 151

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>41058_ghr-MIR396b:mirbase
          Length = 135

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41057_ghr-MIR396a:mirbase
          Length = 136

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>40727_mtr-MIR396b:mirbase
          Length = 95

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 6  ttccacagctttcttgaact 25




>40646_lja-MIR396:mirbase
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35




>40477_gma-MIR396e:mirbase
          Length = 114

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 7  ttccacagctttcttgaact 26




>40473_gma-MIR396a:mirbase
          Length = 140

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>40085_ath-MIR396a:mirbase
          Length = 151

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>39877_aly-MIR396a:mirbase
          Length = 172

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 24 ttccacagctttcttgaact 43




>39379_pab-MIR396a:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttccacagctttcttgaact 36
          ||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35