miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39430_pta-MIR482b:mirbase
Length = 92
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 gaggtgtggaaggatagggtaagactagggttaagcagaaactctgcttcattaattctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaggtgtggaaggatagggtaagactagggttaagcagaaactctgcttcattaattctc 60
Query: 61 tgctccagtcttccctactcctcccattcctt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 tgctccagtcttccctactcctcccattcctt 92
>39429_pta-MIR482a:mirbase
Length = 92
Score = 167 bits (84), Expect = 2e-42
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 1 gaggtgtggaaggatagggtaagactagggttaagcagaaactctgcttcattaattctc 60
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 1 gaggtgtggaaggatagggtaagactaaggttaaggagaaactctgcttcattaattctc 60
Query: 61 tgctccagtcttccctactcctcccattcctt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 tgctccagtcttccctactcctcccattcctt 92
>39432_pta-MIR482d:mirbase
Length = 92
Score = 159 bits (80), Expect = 4e-40
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 1 gaggtgtggaaggatagggtaagactagggttaagcagaaactctgcttcattaattctc 60
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 1 gaggtgtggaaggatagggtaagactaaggttaaggagaaactctgcttcattaattctc 60
Query: 61 tgctccagtcttccctactcctcccattcctt 92
|||||||||| |||||||||||||||||||||
Sbjct: 61 tgctccagtcctccctactcctcccattcctt 92
>39383_pab-MIR482a:mirbase
Length = 118
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 65 ccagtcttccctactcctcccattcct 91
|||||||||||||||||||||||||||
Sbjct: 74 ccagtcttccctactcctcccattcct 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 gaggtgtggaaggatagggtaagactagggttaag 35
|||| ||||||||||||||||||||| |||||||
Sbjct: 4 gaggagtggaaggatagggtaagactgcggttaag 38
>39431_pta-MIR482c:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 cagtcttccctactcctcccattcct 91
|||||||||||| |||||||||||||
Sbjct: 55 cagtcttccctattcctcccattcct 80
>39385_pab-MIR482c:mirbase
Length = 137
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 cagtcttccctactcctcccattcct 91
||||||| ||||||||||||||||||
Sbjct: 82 cagtctttcctactcctcccattcct 107
>41687_vvi-MIR482:mirbase
Length = 117
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 67 agtcttccctactcctcccattcct 91
|||||| ||||||||||||||||||
Sbjct: 84 agtctttcctactcctcccattcct 108
>39384_pab-MIR482b:mirbase
Length = 121
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 67 agtcttccctactcctcccattcct 91
||||||||||| |||||||||||||
Sbjct: 74 agtcttccctattcctcccattcct 98
