miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41313_ptc-MIR162a:mirbase
Length = 107
Score = 212 bits (107), Expect = 4e-56
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 tgggaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgggaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagca 60
Query: 61 cgaaaaacatgaaccgatcgataaacctctgcatccagcgcttcctt 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgaaaaacatgaaccgatcgataaacctctgcatccagcgcttcctt 107
>41315_ptc-MIR162c:mirbase
Length = 107
Score = 123 bits (62), Expect = 3e-29
Identities = 92/102 (90%)
Strand = Plus / Plus
Query: 4 gaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacga 63
||||||||||||||||||||||||||||||| |||||| | |||||||||| |||||
Sbjct: 4 gaagacactggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacga 63
Query: 64 aaaacatgaaccgatcgataaacctctgcatccagcgcttcc 105
| |||| |||||||||||||||||||||||||||| ||||||
Sbjct: 64 acaacacgaaccgatcgataaacctctgcatccagtgcttcc 105
>41314_ptc-MIR162b:mirbase
Length = 107
Score = 123 bits (62), Expect = 3e-29
Identities = 92/102 (90%)
Strand = Plus / Plus
Query: 4 gaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacga 63
||||||||||||||||||||||||||||||| |||||| | |||||||||| |||||
Sbjct: 4 gaagacactggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacga 63
Query: 64 aaaacatgaaccgatcgataaacctctgcatccagcgcttcc 105
| |||| |||||||||||||||||||||||||||| ||||||
Sbjct: 64 acaacacgaaccgatcgataaacctctgcatccagtgcttcc 105
>41046_ghr-MIR162a:mirbase
Length = 148
Score = 79.8 bits (40), Expect = 4e-16
Identities = 87/101 (86%), Gaps = 5/101 (4%)
Strand = Plus / Plus
Query: 5 aagacactggaggcagcggttcatcgatctcttcctggccaattttttgt----ttagca 60
||||||||||||||||||||||||||||||||||||| | ||| |||| || ||
Sbjct: 18 aagacactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataaca 77
Query: 61 cgaaaaacatgaaccgatcgataaacctctgcatccagcgc 101
| ||| ||||||| |||||||||||||||||||||||||||
Sbjct: 78 c-aaatacatgaatcgatcgataaacctctgcatccagcgc 117
>41090_tcc-MIR162:mirbase
Length = 131
Score = 75.8 bits (38), Expect = 6e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 5 aagacactggaggcagcggttcatcgatctcttcctgg 42
||||||||||||||||||||||||||||||||||||||
Sbjct: 15 aagacactggaggcagcggttcatcgatctcttcctgg 52
>40437_gma-MIR162:mirbase
Length = 102
Score = 75.8 bits (38), Expect = 6e-15
Identities = 84/99 (84%), Gaps = 4/99 (4%)
Strand = Plus / Plus
Query: 4 gaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacga 63
|||| ||||||| ||||||||||||||||||||||||| | | ||||||| || |
Sbjct: 3 gaagtcactggatgcagcggttcatcgatctcttcctg----aatcgttgtttaacatca 58
Query: 64 aaaacatgaaccgatcgataaacctctgcatccagcgct 102
|| |||||| ||||||||||||||||||||||||||||
Sbjct: 59 gaaccatgaatcgatcgataaacctctgcatccagcgct 97
>40342_rco-MIR162:mirbase
Length = 101
Score = 69.9 bits (35), Expect = 4e-13
Identities = 85/100 (85%), Gaps = 5/100 (5%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatctcttcctggccaatttt-ttgtttagcacgaaaaa 67
|||||||||||||||||||||||||||||||||| ||||| |||| | || || ||
Sbjct: 2 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 61
Query: 68 ----catgaaccgatcgataaacctctgcatccagcgctt 103
|||||| |||||||||||||||||||||||||||||
Sbjct: 62 aacgcatgaatcgatcgataaacctctgcatccagcgctt 101
>40329_cpa-MIR162a:mirbase
Length = 109
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatctcttcctgg 42
||||||||||||||||||||||||||||||||||
Sbjct: 11 cactggaggcagcggttcatcgatctcttcctgg 44
>39813_aly-MIR162b:mirbase
Length = 184
Score = 65.9 bits (33), Expect = 6e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 63 aaaaacatgaaccgatcgataaacctctgcatccagcgctt 103
|||| |||||| |||||||||||||||||||||||||||||
Sbjct: 98 aaaagcatgaatcgatcgataaacctctgcatccagcgctt 138
>41220_csi-MIR162:mirbase
Length = 201
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 67 acatgaaccgatcgataaacctctgcatccagcgct 102
||||||| ||||||||||||||||||||||||||||
Sbjct: 150 acatgaatcgatcgataaacctctgcatccagcgct 185
>39812_aly-MIR162a:mirbase
Length = 228
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatctcttcctgg 42
||||||||||||||||||||||||||||||||
Sbjct: 68 ctggaggcagcggttcatcgatctcttcctgg 99
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 63 aaaaacatgaaccgatcgataaacctctgcatccagcg 100
|||| |||||| |||||||||||||||||||||||||
Sbjct: 121 aaaagcatgaatagatcgataaacctctgcatccagcg 158
>40663_mtr-MIR162:mirbase
Length = 124
Score = 61.9 bits (31), Expect = 9e-11
Identities = 81/96 (84%), Gaps = 5/96 (5%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatctcttcctggccaatttt--ttgtttagcacgaaaa 66
||||||| |||||||||||||||||| |||||| |||||| |||| | | | | ||
Sbjct: 19 cactggatgcagcggttcatcgatctgttcctg---aattttgtttgtctcgtaaaacaa 75
Query: 67 acatgaaccgatcgataaacctctgcatccagcgct 102
||||||| || |||||||||||||||||||||||||
Sbjct: 76 acatgaatcggtcgataaacctctgcatccagcgct 111
>40024_ath-MIR162a:mirbase
Length = 140
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatctcttcctg 41
|||||||||||||||||||||||||||||||
Sbjct: 25 ctggaggcagcggttcatcgatctcttcctg 55
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 63 aaaaacatgaaccgatcgataaacctctgcatccagcg 100
|||| |||||| |||||||||||||||||||||||||
Sbjct: 74 aaaagcatgaatagatcgataaacctctgcatccagcg 111
>41578_vvi-MIR162:mirbase
Length = 103
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 4 gaagacactggaggcagcggttcatcgatctcttcctg 41
|||| ||||||| |||||||||||||||||||||||||
Sbjct: 2 gaagtcactggatgcagcggttcatcgatctcttcctg 39
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tcgataaacctctgcatccagcg 100
|||||||||||||||||||||||
Sbjct: 73 tcgataaacctctgcatccagcg 95
>40025_ath-MIR162b:mirbase
Length = 111
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccagcgct 102
||||||||||||||||||||||||||||
Sbjct: 76 cgatcgataaacctctgcatccagcgct 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatc 33
|||||||||||||||||||||||
Sbjct: 12 ctggaggcagcggttcatcgatc 34
>42502_sbi-MIR162:mirbase
Length = 127
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccag 98
||||||||||||||||||||||||
Sbjct: 104 cgatcgataaacctctgcatccag 127
>41929_osa-MIR162a:mirbase
Length = 171
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccag 98
||||||||||||||||||||||||
Sbjct: 140 cgatcgataaacctctgcatccag 163
>41736_bdi-MIR162:mirbase
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatcc 96
||||||||||||||||||||||
Sbjct: 108 cgatcgataaacctctgcatcc 129
>42708_zma-MIR162:mirbase
Length = 130
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tcgataaacctctgcatccag 98
|||||||||||||||||||||
Sbjct: 110 tcgataaacctctgcatccag 130
>41530_sly-MIR162:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tcgataaacctctgcatccag 98
|||||||||||||||||||||
Sbjct: 79 tcgataaacctctgcatccag 99
>41930_osa-MIR162b:mirbase
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccag 98
|||||||||| |||||||||||||
Sbjct: 101 cgatcgataagcctctgcatccag 124
