miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaac 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaac 60
Query: 69 atgaaccgatcgataaacctctgcatccagc 99
|||||||||||||||||||||||||||||||
Sbjct: 61 atgaaccgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 107 bits (54), Expect = 3e-23
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaac 68
|||||||||||||||||||||||||| |||||| | |||||||||| |||||| |||
Sbjct: 1 cactggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaac 60
Query: 69 atgaaccgatcgataaacctctgcatccag 98
| ||||||||||||||||||||||||||||
Sbjct: 61 acgaaccgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatctcttcctgg 42
||||||||||||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctgg 34
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatctcttcctgg 42
||||||||||||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctgg 34
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatctcttcctg 41
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 63 aaaaacatgaaccgatcgataaacctctgcatccagc 99
|||| |||||| ||||||||||||||||||||||||
Sbjct: 52 aaaagcatgaatagatcgataaacctctgcatccagc 88
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatctcttcctg 41
||||||| |||||||||||||||||||||||||
Sbjct: 1 cactggatgcagcggttcatcgatctcttcctg 33
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcgataaacctctgcatccagc 99
||||||||||||||||||||||
Sbjct: 67 tcgataaacctctgcatccagc 88
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 56.0 bits (28), Expect = 1e-07
Identities = 78/93 (83%), Gaps = 5/93 (5%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatctcttcctggccaatttt--ttgtttagcacgaaaa 66
||||||| |||||||||||||||||| |||||| |||||| |||| | | | | ||
Sbjct: 1 cactggatgcagcggttcatcgatctgttcctg---aattttgtttgtctcgtaaaacaa 57
Query: 67 acatgaaccgatcgataaacctctgcatccagc 99
||||||| || ||||||||||||||||||||||
Sbjct: 58 acatgaatcggtcgataaacctctgcatccagc 90
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
subsp. pekinensis
Length = 92
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 63 aaaaacatgaaccgatcgataaacctctgcatccagc 99
|||| ||||||| ||||||||||||| ||||||||||
Sbjct: 56 aaaagcatgaacagatcgataaacctgtgcatccagc 92
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatctctt 37
||||||||||||||| |||||||||||
Sbjct: 3 ctggaggcagcggttgatcgatctctt 29
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccagc 99
|||||||||||||||||||||||||
Sbjct: 67 cgatcgataaacctctgcatccagc 91
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatc 33
|||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccagc 99
|||||||||||||||||||||||||
Sbjct: 108 cgatcgataaacctctgcatccagc 132
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccag 98
||||||||||||||||||||||||
Sbjct: 134 cgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccag 98
||||||||||||||||||||||||
Sbjct: 135 cgatcgataaacctctgcatccag 158
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcgataaacctctgcatccagc 99
||||||||||||||||||||||
Sbjct: 112 tcgataaacctctgcatccagc 133
