miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33056_rno-mir-3563:mirbase
Length = 118
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 gctgggctggataccaagaagcggtttaccgtcccacatacatactcaaaatgtatgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gctgggctggataccaagaagcggtttaccgtcccacatacatactcaaaatgtatgtgg 71
Query: 61 gacggtaaaccatttcttcaagtaccgcgtga 92
||||||||||||||||||||||||||||||||
Sbjct: 72 gacggtaaaccatttcttcaagtaccgcgtga 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 23 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 71
||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 82 ggtttaccgtcccacatacattttgagtatgtatgtgggacggtaaacc 34
>33057_rno-mir-3563:mirbase
Length = 118
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 gctgggctggataccaagaagcggtttaccgtcccacatacatactcaaaatgtatgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gctgggctggataccaagaagcggtttaccgtcccacatacatactcaaaatgtatgtgg 71
Query: 61 gacggtaaaccatttcttcaagtaccgcgtga 92
||||||||||||||||||||||||||||||||
Sbjct: 72 gacggtaaaccatttcttcaagtaccgcgtga 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 23 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 71
||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 82 ggtttaccgtcccacatacattttgagtatgtatgtgggacggtaaacc 34
>33803_oar-mir-299:mirbase
Length = 104
Score = 151 bits (76), Expect = 1e-37
Identities = 85/88 (96%)
Strand = Plus / Minus
Query: 1 gctgggctggataccaagaagcggtttaccgtcccacatacatactcaaaatgtatgtgg 60
||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 97 gctgggcaggataccaagaagcggtttaccgtcccacatacatattcagaatgtatgtgg 38
Query: 61 gacggtaaaccatttcttcaagtaccgc 88
||||||||||||||||||||||||||||
Sbjct: 37 gacggtaaaccatttcttcaagtaccgc 10
Score = 73.8 bits (37), Expect = 2e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 23 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 71
||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
>33804_oar-mir-299:mirbase
Length = 104
Score = 151 bits (76), Expect = 1e-37
Identities = 85/88 (96%)
Strand = Plus / Minus
Query: 1 gctgggctggataccaagaagcggtttaccgtcccacatacatactcaaaatgtatgtgg 60
||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 97 gctgggcaggataccaagaagcggtttaccgtcccacatacatattcagaatgtatgtgg 38
Query: 61 gacggtaaaccatttcttcaagtaccgc 88
||||||||||||||||||||||||||||
Sbjct: 37 gacggtaaaccatttcttcaagtaccgc 10
Score = 73.8 bits (37), Expect = 2e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 23 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 71
||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
>34050_ssc-mir-299:mirbase
Length = 79
Score = 141 bits (71), Expect = 1e-34
Identities = 77/79 (97%)
Strand = Plus / Minus
Query: 9 ggataccaagaagcggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaa 68
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 79 ggataccaagaagcggtttaccgtcccacatacatatgcaaaatgtatgtgggacggtaa 20
Query: 69 accatttcttcaagtaccg 87
|||||||||||||||||||
Sbjct: 19 accatttcttcaagtaccg 1
Score = 58.0 bits (29), Expect = 1e-09
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 23 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 71
||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 17 ggtttaccgtcccacatacattttgcatatgtatgtgggacggtaaacc 65
>30306_ptr-mir-299:mirbase
Length = 69
Score = 129 bits (65), Expect = 4e-31
Identities = 68/69 (98%)
Strand = Plus / Minus
Query: 10 gataccaagaagcggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaa 69
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 69 gataccaagaagcggtttaccgtcccacatacatattcaaaatgtatgtgggacggtaaa 10
Query: 70 ccatttctt 78
|||||||||
Sbjct: 9 ccatttctt 1
Score = 65.9 bits (33), Expect = 5e-12
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 23 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 71
||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 8 ggtttaccgtcccacatacattttgaatatgtatgtgggacggtaaacc 56
>26786_cfa-mir-299:mirbase
Length = 63
Score = 125 bits (63), Expect = 6e-30
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 16 aagaagcggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaaccattt 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 aagaagcggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaaccattt 4
Query: 76 ctt 78
|||
Sbjct: 3 ctt 1
Score = 58.0 bits (29), Expect = 1e-09
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 23 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 71
||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 8 ggtttaccgtcccacatacattttgagtatgtatgtgggacggtaaacc 56
>31978_mmu-mir-299:mirbase
Length = 63
Score = 125 bits (63), Expect = 6e-30
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 16 aagaagcggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaaccattt 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 aagaagcggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaaccattt 4
Query: 76 ctt 78
|||
Sbjct: 3 ctt 1
Score = 58.0 bits (29), Expect = 1e-09
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 23 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 71
||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 8 ggtttaccgtcccacatacattttgagtatgtatgtgggacggtaaacc 56
>32834_rno-mir-299:mirbase
Length = 63
Score = 125 bits (63), Expect = 6e-30
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 16 aagaagcggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaaccattt 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 aagaagcggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaaccattt 4
Query: 76 ctt 78
|||
Sbjct: 3 ctt 1
Score = 58.0 bits (29), Expect = 1e-09
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 23 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 71
||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 8 ggtttaccgtcccacatacattttgagtatgtatgtgggacggtaaacc 56
>27111_eca-mir-299:mirbase
Length = 63
Score = 117 bits (59), Expect = 1e-27
Identities = 62/63 (98%)
Strand = Plus / Minus
Query: 16 aagaagcggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaaccattt 75
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 aagaagcggtttaccatcccacatacatactcaaaatgtatgtgggacggtaaaccattt 4
Query: 76 ctt 78
|||
Sbjct: 3 ctt 1
Score = 50.1 bits (25), Expect = 3e-07
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 23 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 71
||||||||||||||||||||| | | |||||||||||| ||||||||
Sbjct: 8 ggtttaccgtcccacatacattttgagtatgtatgtgggatggtaaacc 56
>30924_ppy-mir-299:mirbase
Length = 63
Score = 117 bits (59), Expect = 1e-27
Identities = 62/63 (98%)
Strand = Plus / Minus
Query: 16 aagaagcggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaaccattt 75
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 63 aagaagcggtttaccgtcccacatacatattcaaaatgtatgtgggacggtaaaccattt 4
Query: 76 ctt 78
|||
Sbjct: 3 ctt 1
Score = 65.9 bits (33), Expect = 5e-12
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 23 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 71
||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 8 ggtttaccgtcccacatacattttgaatatgtatgtgggacggtaaacc 56
>30925_ppy-mir-299:mirbase
Length = 63
Score = 117 bits (59), Expect = 1e-27
Identities = 62/63 (98%)
Strand = Plus / Minus
Query: 16 aagaagcggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaaccattt 75
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 63 aagaagcggtttaccgtcccacatacatattcaaaatgtatgtgggacggtaaaccattt 4
Query: 76 ctt 78
|||
Sbjct: 3 ctt 1
Score = 65.9 bits (33), Expect = 5e-12
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 23 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 71
||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 8 ggtttaccgtcccacatacattttgaatatgtatgtgggacggtaaacc 56
>27827_mml-mir-299:mirbase
Length = 63
Score = 109 bits (55), Expect = 3e-25
Identities = 61/63 (96%)
Strand = Plus / Minus
Query: 16 aagaagcggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaaccattt 75
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 63 aagaagcggtttaccgtcccacatacatattgaaaatgtatgtgggacggtaaaccattt 4
Query: 76 ctt 78
|||
Sbjct: 3 ctt 1
Score = 73.8 bits (37), Expect = 2e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 23 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 71
||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 8 ggtttaccgtcccacatacattttcaatatgtatgtgggacggtaaacc 56
>27828_mml-mir-299:mirbase
Length = 63
Score = 109 bits (55), Expect = 3e-25
Identities = 61/63 (96%)
Strand = Plus / Minus
Query: 16 aagaagcggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaaccattt 75
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 63 aagaagcggtttaccgtcccacatacatattgaaaatgtatgtgggacggtaaaccattt 4
Query: 76 ctt 78
|||
Sbjct: 3 ctt 1
Score = 73.8 bits (37), Expect = 2e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 23 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 71
||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 8 ggtttaccgtcccacatacattttcaatatgtatgtgggacggtaaacc 56
>28550_hsa-mir-299:mirbase
Length = 63
Score = 109 bits (55), Expect = 3e-25
Identities = 61/63 (96%)
Strand = Plus / Minus
Query: 16 aagaagcggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaaccattt 75
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 63 aagaagcggtttaccatcccacatacatattcaaaatgtatgtgggacggtaaaccattt 4
Query: 76 ctt 78
|||
Sbjct: 3 ctt 1
Score = 58.0 bits (29), Expect = 1e-09
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 23 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 71
||||||||||||||||||||| | || |||||||||||| ||||||||
Sbjct: 8 ggtttaccgtcccacatacattttgaatatgtatgtgggatggtaaacc 56
>28551_hsa-mir-299:mirbase
Length = 63
Score = 109 bits (55), Expect = 3e-25
Identities = 61/63 (96%)
Strand = Plus / Minus
Query: 16 aagaagcggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaaccattt 75
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 63 aagaagcggtttaccatcccacatacatattcaaaatgtatgtgggacggtaaaccattt 4
Query: 76 ctt 78
|||
Sbjct: 3 ctt 1
Score = 58.0 bits (29), Expect = 1e-09
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 23 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 71
||||||||||||||||||||| | || |||||||||||| ||||||||
Sbjct: 8 ggtttaccgtcccacatacattttgaatatgtatgtgggatggtaaacc 56
>33307_bta-mir-299:mirbase
Length = 63
Score = 109 bits (55), Expect = 3e-25
Identities = 61/63 (96%)
Strand = Plus / Minus
Query: 16 aagaagcggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaaccattt 75
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 63 aagaagcggtttaccgtcccacatacatattcagaatgtatgtgggacggtaaaccattt 4
Query: 76 ctt 78
|||
Sbjct: 3 ctt 1
Score = 73.8 bits (37), Expect = 2e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 23 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 71
||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 8 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 56
