miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52901_ptc-miRf11079-akr:pmrd
Length = 171
Score = 321 bits (162), Expect = 9e-89
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 1 gtgagcaagatggagaagcagggcacgtgcactactaactcatgcacacagagagggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtgagcaagatggagaagcagggcacgtgcactactaactcatgcacacagagagggaga 64
Query: 61 cgcatttcttgctggagttacgagttacgactcttacctactattgattttgttagctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcatttcttgctggagttacgagttacgactcttacctactattgattttgttagctcc 124
Query: 121 agtgagttagttattcatgtgcctgtcttcctcatcatgatc 162
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 agtgagttagttattcatgtgcctgtcttcctcatcatgatc 166
>53142_ptc-miRf11320-akr:pmrd
Length = 167
Score = 167 bits (84), Expect = 3e-42
Identities = 142/162 (87%), Gaps = 7/162 (4%)
Strand = Plus / Plus
Query: 1 gtgagcaagatggagaagcagggcacgtgcactactaactcatgcacacagagagggaga 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct: 5 gtgagcaagatggagaagcagggcacgtgcattactaactcatgcacacagagtgagaga 64
Query: 61 cgcatttcttgctggagttacgagttacgactcttacctactattgattttgttagctcc 120
|||||||||||| |||||| |||||||||||||||| |||| |||| ||| |
Sbjct: 65 gacatttcttgctg-------gagttatgactcttacctactatagattgtgttggcttc 117
Query: 121 agtgagttagttattcatgtgcctgtcttcctcatcatgatc 162
|| ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 118 agcgagttagttcttcatgtgcctgtcttccccatcatgatc 159
>51623_ptc-miR164e:pmrd
Length = 155
Score = 167 bits (84), Expect = 3e-42
Identities = 142/162 (87%), Gaps = 7/162 (4%)
Strand = Plus / Plus
Query: 1 gtgagcaagatggagaagcagggcacgtgcactactaactcatgcacacagagagggaga 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct: 1 gtgagcaagatggagaagcagggcacgtgcattactaactcatgcacacagagtgagaga 60
Query: 61 cgcatttcttgctggagttacgagttacgactcttacctactattgattttgttagctcc 120
|||||||||||| |||||| |||||||||||||||| |||| |||| ||| |
Sbjct: 61 gacatttcttgctg-------gagttatgactcttacctactatagattgtgttggcttc 113
Query: 121 agtgagttagttattcatgtgcctgtcttcctcatcatgatc 162
|| ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 114 agcgagttagttcttcatgtgcctgtcttccccatcatgatc 155
>51348_ppl-miR164:pmrd
Length = 159
Score = 167 bits (84), Expect = 3e-42
Identities = 142/162 (87%), Gaps = 7/162 (4%)
Strand = Plus / Plus
Query: 1 gtgagcaagatggagaagcagggcacgtgcactactaactcatgcacacagagagggaga 60
||||||||||||||||||||||||||||||| |||||||||||||| |||||| | ||||
Sbjct: 1 gtgagcaagatggagaagcagggcacgtgcattactaactcatgcatacagagtgagaga 60
Query: 61 cgcatttcttgctggagttacgagttacgactcttacctactattgattttgttagctcc 120
||||||||||| ||||||| |||||||||||||||| ||||||||| || |
Sbjct: 61 gacatttcttgct-------cgagttatgactcttacctactatagattttgttggcctc 113
Query: 121 agtgagttagttattcatgtgcctgtcttcctcatcatgatc 162
|||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 114 agtgagttagttcttcatgtgcctgtcttccccatcatgatc 155
>54787_vvi-miR164c:pmrd
Length = 97
Score = 75.8 bits (38), Expect = 9e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcactactaactcatgcac 47
|||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcatgcac 47
>48709_mtr-miR164b:pmrd
Length = 144
Score = 69.9 bits (35), Expect = 6e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 6 caagatggagaagcagggcacgtgcactactaactcatg 44
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 caagatggagaagcagggcacgtgcaatactaactcatg 39
>47347_ath-miRf10247-akr:pmrd
Length = 159
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 6 caagatggagaagcagggcacgtgcactactaactcat 43
|||||||||||||||||||||||||| ||||| |||||
Sbjct: 1 caagatggagaagcagggcacgtgcattactagctcat 38
>48473_csi-miR164:pmrd
Length = 168
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcactactaactca 42
||||||||||||||||||||| ||||||||||
Sbjct: 1 tggagaagcagggcacgtgcattactaactca 32
>46941_ath-miR164b:pmrd
Length = 153
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgcactactaactcat 43
||||||||||||||||||||||| ||||| |||||
Sbjct: 1 gatggagaagcagggcacgtgcattactagctcat 35
>54788_vvi-miR164d:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>46942_ath-miR164c:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>54956_zma-miR164h:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 4 tggagaagcagggcacgtgca 24
>54955_zma-miR164g:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 1 tggagaagcagggcacgtgca 21
>54954_zma-miR164f:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 1 tggagaagcagggcacgtgca 21
>54953_zma-miR164e:pmrd
Length = 242
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 4 tggagaagcagggcacgtgca 24
>54952_zma-miR164d:pmrd
Length = 216
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 20 tggagaagcagggcacgtgca 40
>54951_zma-miR164c:pmrd
Length = 270
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 18 tggagaagcagggcacgtgca 38
>54950_zma-miR164b:pmrd
Length = 128
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 21 tggagaagcagggcacgtgca 41
>54949_zma-miR164a:pmrd
Length = 152
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 19 tggagaagcagggcacgtgca 39
>54785_vvi-miR164a:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31
>54676_tae-miR164b:pmrd
Length = 152
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 1 tggagaagcagggcacgtgca 21
>54414_sbi-miR164e:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 3 tggagaagcagggcacgtgca 23
>54413_sbi-miR164d:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 1 tggagaagcagggcacgtgca 21
>54410_sbi-miR164:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 1 tggagaagcagggcacgtgca 21
>51862_ptc-miRf10040-akr:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 77 tggagaagcagggcacgtgca 57
>51622_ptc-miR164d:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31
>51621_ptc-miR164c:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31
>51619_ptc-miR164a:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31
>50414_osa-miRf11199-akr:pmrd
Length = 146
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 13 tggagaagcagggcacgtgca 33
>48843_osa-miR164f:pmrd
Length = 210
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 24 tggagaagcagggcacgtgca 44
>48839_osa-miR164b:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 9 tggagaagcagggcacgtgca 29
>48838_osa-miR164a:pmrd
Length = 156
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 17 tggagaagcagggcacgtgca 37
>48710_mtr-miR164c:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 6 tggagaagcagggcacgtgca 26
>48708_mtr-miR164a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 6 tggagaagcagggcacgtgca 26
>48547_gma-miR164:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31
>48419_cav-miR164:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31
>48398_bra-miR164a:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 10 tggagaagcagggcacgtgca 30
>48341_bna-miR164:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 7 tggagaagcagggcacgtgca 27
>47540_ath-miRf10440-akr:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 95 tggagaagcagggcacgtgca 75
>47539_ath-miRf10439-akr:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 96 tggagaagcagggcacgtgca 76
>46940_ath-miR164a:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 19 tggagaagcagggcacgtgca 39
>54411_sbi-miR164b:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgc 30
||||||||||||||||||||
Sbjct: 21 tggagaagcagggcacgtgc 40
>48841_osa-miR164d:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgc 30
||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30
