miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41319_ptc-MIR164d:mirbase
          Length = 99

 Score =  196 bits (99), Expect = 2e-51
 Identities = 99/99 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctcacgctggagaagcagggcacgtgcaaaatccttctcggcttccagatgctgatg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tggctcacgctggagaagcagggcacgtgcaaaatccttctcggcttccagatgctgatg 60

                                                 
Query: 61 aagcactctttgcacgtgctcccctcctccaacatgagt 99
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagcactctttgcacgtgctcccctcctccaacatgagt 99




>41316_ptc-MIR164a:mirbase
          Length = 85

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 9  gctggagaagcagggcacgtgcaaaatcct 38
          ||||||||||||||||||||||||||||||
Sbjct: 9  gctggagaagcagggcacgtgcaaaatcct 38




>42712_zma-MIR164d:mirbase
          Length = 216

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 6  cacgctggagaagcagggcacgtgca 31
          ||||||||||||||||||||||||||
Sbjct: 15 cacgctggagaagcagggcacgtgca 40




>42709_zma-MIR164a:mirbase
          Length = 152

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 6  cacgctggagaagcagggcacgtgca 31
          ||||||||||||||||||||||||||
Sbjct: 14 cacgctggagaagcagggcacgtgca 39




>40313_bra-MIR164a:mirbase
          Length = 92

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 69 tttgcacgtgctcccctcctccaacatgag 98
          |||||||||||||| |||||||||||||||
Sbjct: 62 tttgcacgtgctccactcctccaacatgag 91



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 6  cacgctggagaagcagggcacgtgcaaa 33
          |||| |||||||||||||||||||||||
Sbjct: 5  cacgttggagaagcagggcacgtgcaaa 32




>41091_tcc-MIR164a:mirbase
          Length = 128

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 11 tggagaagcagggcacgtgcaaaat 35
          |||||||||||||||||||||||||
Sbjct: 21 tggagaagcagggcacgtgcaaaat 45



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 71  tgcacgtgctcccctcctccaaca 94
           ||||||||||||||| ||||||||
Sbjct: 88  tgcacgtgctccccttctccaaca 111




>40344_rco-MIR164b:mirbase
          Length = 104

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  gctggagaagcagggcacgtgcaaa 33
          |||||||||||||||||||||||||
Sbjct: 4  gctggagaagcagggcacgtgcaaa 28



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 69  tttgcacgtgctcccctcctccaacatg 96
           ||||||||||||||||| ||||||||||
Sbjct: 75  tttgcacgtgctccccttctccaacatg 102




>41318_ptc-MIR164c:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  gctggagaagcagggcacgtgcaa 32
          ||||||||||||||||||||||||
Sbjct: 9  gctggagaagcagggcacgtgcaa 32



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 70 ttgcacgtgctcccctcctccaacatg 96
          |||||||||||||||| ||||||||||
Sbjct: 53 ttgcacgtgctccccttctccaacatg 79




>40343_rco-MIR164a:mirbase
          Length = 78

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  gctggagaagcagggcacgtgcaa 32
          ||||||||||||||||||||||||
Sbjct: 4  gctggagaagcagggcacgtgcaa 27




>40263_bna-MIR164:mirbase
          Length = 86

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 6  cacgctggagaagcagggcacgtgcaaa 33
          |||| |||||||||||||||||||||||
Sbjct: 2  cacgttggagaagcagggcacgtgcaaa 29



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 69 tttgcacgtgctcccctcctccaacatg 96
          |||||||||||||| |||||||||||||
Sbjct: 59 tttgcacgtgctccactcctccaacatg 86




>41741_bdi-MIR164e:mirbase
          Length = 127

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tggagaagcagggcacgtgcaaa 33
          |||||||||||||||||||||||
Sbjct: 19 tggagaagcagggcacgtgcaaa 41




>41579_vvi-MIR164a:mirbase
          Length = 121

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 70  ttgcacgtgctcccctcctccaacatg 96
           |||||||||||||||| ||||||||||
Sbjct: 88  ttgcacgtgctccccttctccaacatg 114



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>40664_mtr-MIR164a:mirbase
          Length = 99

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tggagaagcagggcacgtgcaaa 33
          |||||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgcaaa 28



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 69 tttgcacgtgctcccctcctccaac 93
          ||||||||||||||||| |||||||
Sbjct: 71 tttgcacgtgctccccttctccaac 95




>40438_gma-MIR164:mirbase
          Length = 95

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 68 ctttgcacgtgctcccctcctccaaca 94
          |||||||||||||||||| ||||||||
Sbjct: 62 ctttgcacgtgctccccttctccaaca 88



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tggagaagcagggcacgtgcaa 32
          ||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32




>40027_ath-MIR164a:mirbase
          Length = 113

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tggagaagcagggcacgtgcaaa 33
          |||||||||||||||||||||||
Sbjct: 19 tggagaagcagggcacgtgcaaa 41




>39816_aly-MIR164a:mirbase
          Length = 79

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tggagaagcagggcacgtgcaaa 33
          |||||||||||||||||||||||
Sbjct: 3  tggagaagcagggcacgtgcaaa 25




>42504_sbi-MIR164b:mirbase
          Length = 111

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  gctggagaagcagggcacgtgc 30
          ||||||||||||||||||||||
Sbjct: 19 gctggagaagcagggcacgtgc 40




>41934_osa-MIR164d:mirbase
          Length = 94

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  gctggagaagcagggcacgtgc 30
          ||||||||||||||||||||||
Sbjct: 9  gctggagaagcagggcacgtgc 30




>41932_osa-MIR164b:mirbase
          Length = 109

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 6  cacgctggagaagcagggcacgtgca 31
          |||| |||||||||||||||||||||
Sbjct: 4  cacggtggagaagcagggcacgtgca 29




>41739_bdi-MIR164c:mirbase
          Length = 138

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  gctggagaagcagggcacgtgc 30
          ||||||||||||||||||||||
Sbjct: 32 gctggagaagcagggcacgtgc 53




>41582_vvi-MIR164d:mirbase
          Length = 118

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 71  tgcacgtgctcccctcctccaacatg 96
           ||||||||||||||| ||||||||||
Sbjct: 86  tgcacgtgctccccttctccaacatg 111



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>41092_tcc-MIR164b:mirbase
          Length = 130

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tggagaagcagggcacgtgcaa 32
          ||||||||||||||||||||||
Sbjct: 21 tggagaagcagggcacgtgcaa 42



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 71  tgcacgtgctcccctcctccaacatgagt 99
           ||||||||||||||| ||||| |||||||
Sbjct: 90  tgcacgtgctccccttctccaccatgagt 118




>41047_ghr-MIR164:mirbase
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tggagaagcagggcacgtgcaa 32
          ||||||||||||||||||||||
Sbjct: 19 tggagaagcagggcacgtgcaa 40



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 68 ctttgcacgtgctcccctcctcca 91
          |||||||||||||||||| |||||
Sbjct: 60 ctttgcacgtgctccccttctcca 83




>40666_mtr-MIR164c:mirbase
          Length = 86

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tggagaagcagggcacgtgcaa 32
          ||||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgcaa 27




>40665_mtr-MIR164b:mirbase
          Length = 144

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tggagaagcagggcacgtgcaa 32
          ||||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgcaa 27




>42715_zma-MIR164g:mirbase
          Length = 171

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 2  tggagaagcagggcacgtgca 22




>42714_zma-MIR164f:mirbase
          Length = 108

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 ctggagaagcagggcacgtgc 30
          |||||||||||||||||||||
Sbjct: 1  ctggagaagcagggcacgtgc 21




>42711_zma-MIR164c:mirbase
          Length = 270

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 18 tggagaagcagggcacgtgca 38




>42710_zma-MIR164b:mirbase
          Length = 128

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 21 tggagaagcagggcacgtgca 41




>42637_tae-MIR164:mirbase
          Length = 156

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 3  tggagaagcagggcacgtgca 23




>42507_sbi-MIR164e:mirbase
          Length = 205

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 3  tggagaagcagggcacgtgca 23




>42506_sbi-MIR164d:mirbase
          Length = 160

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>42503_sbi-MIR164:mirbase
          Length = 126

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>41936_osa-MIR164f:mirbase
          Length = 210

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 24 tggagaagcagggcacgtgca 44




>41933_osa-MIR164c:mirbase
          Length = 119

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 11 tggagaagcagggcacgtgcaaaat 35
          ||||||||||||| |||||||||||
Sbjct: 11 tggagaagcagggtacgtgcaaaat 35




>41931_osa-MIR164a:mirbase
          Length = 156

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 17 tggagaagcagggcacgtgca 37




>41742_bdi-MIR164f:mirbase
          Length = 161

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 11  tggagaagcagggcacgtgca 31
           |||||||||||||||||||||
Sbjct: 144 tggagaagcagggcacgtgca 124




>41740_bdi-MIR164d:mirbase
          Length = 186

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 18 tggagaagcagggcacgtgca 38




>41738_bdi-MIR164b:mirbase
          Length = 209

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 33 tggagaagcagggcacgtgca 53




>41737_bdi-MIR164a:mirbase
          Length = 193

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 31 tggagaagcagggcacgtgca 51




>41581_vvi-MIR164c:mirbase
          Length = 97

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>41320_ptc-MIR164e:mirbase
          Length = 155

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>41317_ptc-MIR164b:mirbase
          Length = 162

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>41278_ctr-MIR164:mirbase
          Length = 297

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 22 tggagaagcagggcacgtgca 42




>41221_csi-MIR164:mirbase
          Length = 278

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 14 tggagaagcagggcacgtgca 34




>40345_rco-MIR164c:mirbase
          Length = 116

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgca 26




>40028_ath-MIR164b:mirbase
          Length = 153

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 3  tggagaagcagggcacgtgca 23




>39817_aly-MIR164b:mirbase
          Length = 161

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 3  tggagaagcagggcacgtgca 23




>41321_ptc-MIR164f:mirbase
          Length = 90

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 9  gctggagaagcagggcacgtgcaaaatc 36
          |||||||||||||||||| ||| |||||
Sbjct: 9  gctggagaagcagggcacatgctaaatc 36




>40029_ath-MIR164c:mirbase
          Length = 102

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tggagaagcagggcacgtgc 30
          ||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30




>39818_aly-MIR164c:mirbase
          Length = 115

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tggagaagcagggcacgtgc 30
          ||||||||||||||||||||
Sbjct: 18 tggagaagcagggcacgtgc 37