miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 307 bits (155), Expect = 2e-83
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 1 gtgagcaagatggagaagcagggcacgtgcattactaactcatgcacacagagtgagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgagcaagatggagaagcagggcacgtgcattactaactcatgcacacagagtgagaga 60
Query: 61 gacatttcttgctggagttatgactcttacctactatagattgtgttggcttcagcgagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gacatttcttgctggagttatgactcttacctactatagattgtgttggcttcagcgagt 120
Query: 121 tagttcttcatgtgcctgtcttccccatcatgatc 155
|||||||||||||||||||||||||||||||||||
Sbjct: 121 tagttcttcatgtgcctgtcttccccatcatgatc 155
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
Length = 148
Score = 139 bits (70), Expect = 1e-32
Identities = 128/148 (86%), Gaps = 7/148 (4%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgcattactaactcatgcacacagagtgagagagacatttc 68
||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||
Sbjct: 1 gatggagaagcagggcacgtgcactactaactcatgcacacagagagggagacgcatttc 60
Query: 69 ttgctg-------gagttatgactcttacctactatagattgtgttggcttcagcgagtt 121
|||||| |||||| |||||||||||||||| |||| |||| ||| ||| |||||
Sbjct: 61 ttgctggagttacgagttacgactcttacctactattgattttgttagctccagtgagtt 120
Query: 122 agttcttcatgtgcctgtcttccccatc 149
|||| |||||||||||||||||| ||||
Sbjct: 121 agttattcatgtgcctgtcttcctcatc 148
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 95.6 bits (48), Expect = 2e-19
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 3 gagcaagatggagaagcagggcacgtgcattactaactcatgcacaca 50
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagcaagatggagaagcagggcacgtgcattactaactcatgcacaca 50
Score = 50.1 bits (25), Expect = 9e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
||||||||| |||||||||| |||||||||||||||
Sbjct: 106 gagttagtttttcatgtgcccatcttccccatcatga 142
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 91.7 bits (46), Expect = 3e-18
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcattactaactcatgcac 47
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactaactcatgcac 47
Score = 65.9 bits (33), Expect = 2e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
|||||||||||||||||||| ||||||||||||||||
Sbjct: 75 gagttagttcttcatgtgcccgtcttccccatcatga 111
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 91.7 bits (46), Expect = 3e-18
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 1 gtgagcaagatggagaagcagggcacgtgcattactaactcatgca 46
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgagcaagatggagaagcagggcacgtgcattactaactcatgca 46
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 119 gttagttcttcatgtgcctgtcttccccatcatga 153
|||||||||||||||||| ||||||||||||||||
Sbjct: 86 gttagttcttcatgtgcccgtcttccccatcatga 120
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 83.8 bits (42), Expect = 6e-16
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcattactaactcatgcac 47
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcatgcac 47
Score = 50.1 bits (25), Expect = 9e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
||||| |||||||||||||| |||||||||||||||
Sbjct: 120 gagttggttcttcatgtgcccctcttccccatcatga 156
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 75.8 bits (38), Expect = 2e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcattactaactcat 43
|||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
Score = 50.1 bits (25), Expect = 9e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
|||||||||||||||||||| ||||| |||||||||
Sbjct: 131 gagttagttcttcatgtgcccatcttcaccatcatga 167
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 75.8 bits (38), Expect = 2e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcattactaactcat 43
|||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
Score = 50.1 bits (25), Expect = 9e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
|||||||||||||||||||| ||||| |||||||||
Sbjct: 130 gagttagttcttcatgtgcccatcttcaccatcatga 166
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
(thale cress)
Length = 169
Score = 75.8 bits (38), Expect = 2e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcattactaactcat 43
|||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
Score = 50.1 bits (25), Expect = 9e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
|||||||||||||||||||| ||||| |||||||||
Sbjct: 129 gagttagttcttcatgtgcccatcttcaccatcatga 165
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 69.9 bits (35), Expect = 1e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 6 caagatggagaagcagggcacgtgcattactaactcatg 44
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatactaactcatg 44
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
|||||||||||||||||||| |||||||||||||||
Sbjct: 113 gagttagttcttcatgtgcccctcttccccatcatga 149
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 69.9 bits (35), Expect = 1e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcattactaactcatg 44
|||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcaacactaactcatg 44
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 118 agttagttcttcatgtgcctgtcttccccatcatga 153
||||||| ||||||||||| |||||||||||||||
Sbjct: 251 agttagtacttcatgtgcccctcttccccatcatga 286
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 65.9 bits (33), Expect = 2e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 6 caagatggagaagcagggcacgtgcattactaactcatgcacaca 50
|||||||||||||||||||||||||| | |||||||||| |||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatgctaactcatgaacaca 50
Score = 50.1 bits (25), Expect = 9e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
|||||||| ||||||||||| |||||||||||||||
Sbjct: 255 gagttagtgcttcatgtgcccctcttccccatcatga 291
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 5 gcaagatggagaagcagggcacgtgcattacta 37
|||||||||||||||||||||||||||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattacta 37
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 5 gcaagatggagaagcagggcacgtgcattact 36
||||||||||||||||||||||||||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattact 36
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 4 agcaagatggagaagcagggcacgtgcattactaactcat 43
|||| ||||||||||||||||||||||| | |||||||||
Sbjct: 4 agcatgatggagaagcagggcacgtgcaatgctaactcat 43
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgcattac 35
|||||||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgcattac 35
>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
(sorghum)
Length = 146
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcattac 35
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
Japonica Group
Length = 113
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcattac 35
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;AP008211.1/23198775-23198954 39947:Oryza sativa
Japonica Group
Length = 180
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcatt 33
|||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcatt 33
>RF00647;MIR164;EU548763.1/160-261 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;ABXC01006220.1/150732-150882 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcat 32
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
(sorghum)
Length = 179
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcat 32
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa
Indica Group
Length = 142
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcat 32
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
