miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41321_ptc-MIR164f:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 tgagccatgctggagaagcagggcacatgctaaatctatcagcttgaaagtctgatagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgagccatgctggagaagcagggcacatgctaaatctatcagcttgaaagtctgatagtt 60
Query: 61 ttgcatgtgctctatctctccagcttggac 90
||||||||||||||||||||||||||||||
Sbjct: 61 ttgcatgtgctctatctctccagcttggac 90
>41093_tcc-MIR164c:mirbase
Length = 112
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 agccatgctggagaagcagggcacatgctaaa 34
||||||||||||||||||||||||||||||||
Sbjct: 13 agccatgctggagaagcagggcacatgctaaa 44
>40346_rco-MIR164d:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 6 catgctggagaagcagggcacatgctaaatctatcag 42
||||||||||||||||||||||||||| || ||||||
Sbjct: 1 catgctggagaagcagggcacatgctagatttatcag 37
>41580_vvi-MIR164b:mirbase
Length = 93
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 ccatgctggagaagcagggcacatgct 31
|||||||||||||||||||||||||||
Sbjct: 5 ccatgctggagaagcagggcacatgct 31
>41934_osa-MIR164d:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 3 agccatgctggagaagcagggcacatgct 31
|||||||||||||||| || |||||||||
Sbjct: 92 agccatgctggagaaggagcgcacatgct 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacatgct 31
||||||||||||||||||| ||||
Sbjct: 8 tgctggagaagcagggcacgtgct 31
>41739_bdi-MIR164c:mirbase
Length = 138
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 3 agccatgctggagaagcagggcacatgct 31
|||||||||||||||| || |||||||||
Sbjct: 109 agccatgctggagaaggagcgcacatgct 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacatgct 31
||||||||||||||||||| ||||
Sbjct: 31 tgctggagaagcagggcacgtgct 54
>41316_ptc-MIR164a:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacatgctaaatc 36
||||||||||||||||||| ||| |||||
Sbjct: 8 tgctggagaagcagggcacgtgcaaaatc 36
>40667_mtr-MIR164d:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacatgct 31
|||||||||||||||||||||
Sbjct: 6 tggagaagcagggcacatgct 26
>42504_sbi-MIR164b:mirbase
Length = 111
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacatgct 31
||||||||||||||||||| ||||
Sbjct: 18 tgctggagaagcagggcacgtgct 41
>41319_ptc-MIR164d:mirbase
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 9 gctggagaagcagggcacatgctaaatc 36
|||||||||||||||||| ||| |||||
Sbjct: 9 gctggagaagcagggcacgtgcaaaatc 36
