miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AC182692.2/98036-98127 3694:Populus trichocarpa
Length = 92
Score = 178 bits (90), Expect = 8e-45
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 tgagccatgctggagaagcagggcacatgctaaatctatcagcttgaaagtctgatagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgagccatgctggagaagcagggcacatgctaaatctatcagcttgaaagtctgatagtt 60
Query: 61 ttgcatgtgctctatctctccagcttggac 90
||||||||||||||||||||||||||||||
Sbjct: 61 ttgcatgtgctctatctctccagcttggac 90
>RF00647;MIR164;ABIM01007299.1/659-745 3649:Carica papaya (papaya)
Length = 87
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 6 catgctggagaagcagggcacatgctaaatctatca 41
|||||||||||||||||||||||||||| |||||||
Sbjct: 6 catgctggagaagcagggcacatgctaagtctatca 41
>RF00647;MIR164;AASG02000725.1/15292-15200 3988:Ricinus communis
(castor bean)
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 3 agccatgctggagaagcagggcacatgctaaatctatcag 42
|||||||||||||||||||||||||||||| || ||||||
Sbjct: 3 agccatgctggagaagcagggcacatgctagatttatcag 42
>RF00647;MIR164;CAAP02000007.1/54906-54816 29760:Vitis vinifera
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 ccatgctggagaagcagggcacatgct 31
|||||||||||||||||||||||||||
Sbjct: 5 ccatgctggagaagcagggcacatgct 31
>RF00647;MIR164;FM162584.1/200-286 3451:Aquilegia vulgaris
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 gagccatgctggagaagcagggcac 26
|||||||||||||||||||||||||
Sbjct: 2 gagccatgctggagaagcagggcac 26
>RF00647;MIR164;AP009712.1/25839-25750 34305:Lotus japonicus
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gctggagaagcagggcacatgct 31
|||||||||||||||||||||||
Sbjct: 9 gctggagaagcagggcacatgct 31
