miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01896;mir-142;AAGW01608371.1/689-584 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 159 bits (80), Expect = 8e-39
Identities = 88/91 (96%)
Strand = Plus / Plus
Query: 8 acagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtantgttt 67
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 11 acagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgttt 70
Query: 68 cctactttatggataagtgcactgtgggctt 98
|||||||||||||| |||| |||||||||||
Sbjct: 71 cctactttatggatgagtgtactgtgggctt 101
>RF01896;mir-142;M31826.1/156-256 9606:Homo sapiens (human)
Length = 101
Score = 155 bits (78), Expect = 1e-37
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 1 cagacagacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cagacagacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgt 63
Query: 61 antgtttcctactttatggat 81
| |||||||||||||||||||
Sbjct: 64 agtgtttcctactttatggat 84
>RF01896;mir-142;AADN02026096.1/1575-1681 9031:Gallus gallus
(chicken)
Length = 107
Score = 139 bits (70), Expect = 8e-33
Identities = 88/93 (94%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 6 agacagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtantg 64
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 9 agacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtg 68
Query: 65 tttcctactttatggataagtgcactgtgggct 97
||||||||||||||||| |||| ||||||||||
Sbjct: 69 tttcctactttatggatgagtgtactgtgggct 101
>RF01896;mir-142;AAVX01306460.1/1282-1378 7868:Callorhinchus milii
(ghost shark)
Length = 97
Score = 79.8 bits (40), Expect = 6e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 2 agacagacagtgcagtcacccataaagtagaaagcactactaac 45
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 5 agacagacagtgcagtcatccataaagtagaaagcactactaac 48
>RF01896;mir-142;BAAF04037757.1/8225-8119 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 71.9 bits (36), Expect = 1e-12
Identities = 72/83 (86%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 16 gtcacccataaagtagaaagcactact-aacagcactggagggtgtantgtttcctactt 74
||||||||||||||||||||||||||| ||| |||| | ||||| ||||||||||||
Sbjct: 19 gtcacccataaagtagaaagcactactaaacttcactatacagtgtagtgtttcctactt 78
Query: 75 tatggataagtgcactgtgggct 97
||||||| ||| |||||| ||||
Sbjct: 79 tatggatgagtacactgttggct 101
>RF01896;mir-142;BAAE01037208.1/1195-1089 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 65.9 bits (33), Expect = 9e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 8 acagtgcagtcacccataaagtagaaagcactactaa 44
|||||||||||| ||||||||||||||||||||||||
Sbjct: 11 acagtgcagtcatccataaagtagaaagcactactaa 47
>RF01896;mir-142;CU633486.9/28311-28205 7955:Danio rerio
(zebrafish)
Length = 107
Score = 61.9 bits (31), Expect = 1e-09
Identities = 73/86 (84%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 8 acagtgcagtcacccataaagtagaaagcactact-aacagcactggagggtgtantgtt 66
||||||||||||| ||||||||||| ||||||||| ||| | || | ||||| ||||
Sbjct: 11 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 70
Query: 67 tcctactttatggataagtgcactgt 92
||||||||||||||| |||| |||||
Sbjct: 71 tcctactttatggatgagtgtactgt 96
>RF01896;mir-142;AAWZ01023107.1/41327-41220 28377:Anolis
carolinensis (green anole)
Length = 108
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 7 gacagtgcagtcacccataaagtagaaagcactactaa 44
||||||| | ||| ||||||||||||||||||||||||
Sbjct: 10 gacagtggactcatccataaagtagaaagcactactaa 47
Score = 52.0 bits (26), Expect = 1e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 57 gtgtantgtttcctactttatggataagtgcactgtg 93
||||| ||||||||||||||||||| |||| ||||||
Sbjct: 62 gtgtagtgtttcctactttatggatgagtgtactgtg 98
