miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31754_mmu-let-7b:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 4 gcagggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccctccgaagataa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcagggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccctccgaagataa 60
Query: 64 ctatacaacctactgccttccctga 88
|||||||||||||||||||||||||
Sbjct: 61 ctatacaacctactgccttccctga 85
>32640_rno-let-7b:mirbase
Length = 85
Score = 155 bits (78), Expect = 6e-39
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 7 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccctccgaagataacta 66
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtgtggtttcagggcagtgatgtcgcccctccgaagataacta 63
Query: 67 tacaacctactgccttccctga 88
||||||||||||||||||||||
Sbjct: 64 tacaacctactgccttccctga 85
>27632_mml-let-7b:mirbase
Length = 83
Score = 153 bits (77), Expect = 3e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 7 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccctccgaagataacta 66
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataacta 62
Query: 67 tacaacctactgccttccctg 87
|||||||||||||||||||||
Sbjct: 63 tacaacctactgccttccctg 83
>28342_hsa-let-7b:mirbase
Length = 83
Score = 153 bits (77), Expect = 3e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 7 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccctccgaagataacta 66
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcggaagataacta 62
Query: 67 tacaacctactgccttccctg 87
|||||||||||||||||||||
Sbjct: 63 tacaacctactgccttccctg 83
>30129_ptr-let-7b:mirbase
Length = 82
Score = 153 bits (77), Expect = 3e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 7 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccctccgaagataacta 66
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataacta 61
Query: 67 tacaacctactgccttccctg 87
|||||||||||||||||||||
Sbjct: 62 tacaacctactgccttccctg 82
>30734_ppy-let-7b:mirbase
Length = 83
Score = 153 bits (77), Expect = 3e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 7 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccctccgaagataacta 66
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataacta 62
Query: 67 tacaacctactgccttccctg 87
|||||||||||||||||||||
Sbjct: 63 tacaacctactgccttccctg 83
>33111_bta-let-7b:mirbase
Length = 81
Score = 125 bits (63), Expect = 6e-30
Identities = 76/79 (96%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 7 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttg-cccctccgaagataact 65
||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct: 3 gggtgaggtagtaggttgtgtggtttcagggtagtgatgttgccccctcggaagataact 62
Query: 66 atacaacctactgccttcc 84
|||||||||||||||||||
Sbjct: 63 atacaacctactgccttcc 81
>33789_bta-mir-3596:mirbase
Length = 83
Score = 123 bits (62), Expect = 2e-29
Identities = 75/78 (96%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 8 ggtgaggtagtaggttgtgtggtttcagggcagtgatgttg-cccctccgaagataacta 66
|||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||
Sbjct: 83 ggtgaggtagtaggttgtgtggtttcagggtagtgatgttgccccctcggaagataacta 24
Query: 67 tacaacctactgccttcc 84
||||||||||||||||||
Sbjct: 23 tacaacctactgccttcc 6
>27321_mdo-let-7b:mirbase
Length = 88
Score = 121 bits (61), Expect = 9e-29
Identities = 79/84 (94%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 7 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc--tccgaagataac 64
||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||||
Sbjct: 5 gggtgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcagaagataac 64
Query: 65 tatacaacctactgccttccctga 88
||||||||||||||||||||||||
Sbjct: 65 tatacaacctactgccttccctga 88
>26379_tgu-let-7b:mirbase
Length = 92
Score = 109 bits (55), Expect = 3e-25
Identities = 79/86 (91%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 5 cagggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc--tccgaagata 62
|||| |||||||||||||||||||||||||||| |||||| ||||||| || | |||||
Sbjct: 6 caggatgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagata 65
Query: 63 actatacaacctactgccttccctga 88
||||||||||||||||||||||||||
Sbjct: 66 actatacaacctactgccttccctga 91
>25871_gga-let-7b:mirbase
Length = 85
Score = 107 bits (54), Expect = 1e-24
Identities = 78/85 (91%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 5 cagggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc--tccgaagata 62
|||| |||||||||||||||||||||||||||| |||||| ||||||| || | |||||
Sbjct: 1 caggatgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagata 60
Query: 63 actatacaacctactgccttccctg 87
|||||||||||||||||||||||||
Sbjct: 61 actatacaacctactgccttccctg 85
>34528_fru-let-7b:mirbase
Length = 84
Score = 103 bits (52), Expect = 2e-23
Identities = 77/84 (91%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 5 cagggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc-tccgaagataa 63
||||||||||||||||||||||||||||||||| ||||| ||||||| || | || |||
Sbjct: 1 cagggtgaggtagtaggttgtgtggtttcagggttgtgattttgccccatcaggagctaa 60
Query: 64 ctatacaacctactgccttccctg 87
||||||||||||||||||||||||
Sbjct: 61 ctatacaacctactgccttccctg 84
>34676_tni-let-7b:mirbase
Length = 84
Score = 103 bits (52), Expect = 2e-23
Identities = 77/84 (91%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 5 cagggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc-tccgaagataa 63
||||||||||||||||||||||||||||||||| ||||| ||||||| || | || |||
Sbjct: 1 cagggtgaggtagtaggttgtgtggtttcagggttgtgattttgccccatcaggagctaa 60
Query: 64 ctatacaacctactgccttccctg 87
||||||||||||||||||||||||
Sbjct: 61 ctatacaacctactgccttccctg 84
>31410_oan-let-7b:mirbase
Length = 82
Score = 101 bits (51), Expect = 8e-23
Identities = 72/78 (92%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 10 tgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc--tccgaagataactat 67
|||||||||||||||||||||||||||| |||||| ||||||| || ||||||||||||
Sbjct: 5 tgaggtagtaggttgtgtggtttcaggggagtgattttgccccaatcagaagataactat 64
Query: 68 acaacctactgccttccc 85
||| ||||||||||||||
Sbjct: 65 acagcctactgccttccc 82
>34171_dre-let-7b:mirbase
Length = 94
Score = 97.6 bits (49), Expect = 1e-21
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 5 cagggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc-tccgaagataa 63
||||||||||||||||||||||||||||||||| ||| | ||||||| || | || |||
Sbjct: 6 cagggtgaggtagtaggttgtgtggtttcagggttgtgtttttgccccatcaggagttaa 65
Query: 64 ctatacaacctactgccttccctga 88
|||||||||||||||||||||||||
Sbjct: 66 ctatacaacctactgccttccctga 90
>26607_cfa-let-7b:mirbase
Length = 69
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 7 gggtgaggtagtaggttgtgtggtttcagggca 39
|||||||||||||||||||||||||||||||||
Sbjct: 37 gggtgaggtagtaggttgtgtggtttcagggca 69
>34178_dre-let-7f:mirbase
Length = 116
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 56 gaagataactatacaacctactgccttccctgagg 90
|||||||||||||||| ||| ||||||||||||||
Sbjct: 68 gaagataactatacaatctattgccttccctgagg 102
>31413_oan-let-7f-1:mirbase
Length = 149
Score = 52.0 bits (26), Expect = 7e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 53 tccgaagataactatacaacctactgccttccctgagg 90
|||| |||||||||||||| ||| ||||||||||||||
Sbjct: 76 tccggagataactatacaatctattgccttccctgagg 113
>33101_rno-mir-3596d:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 58 agataactatacaacctactgccttccctgagg 90
|||||||||||||| ||| ||||||||||||||
Sbjct: 36 agataactatacaatctattgccttccctgagg 4
>26384_tgu-let-7f:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 58 agataactatacaacctactgccttccctgag 89
|||||||||||||| ||| |||||||||||||
Sbjct: 61 agataactatacaatctattgccttccctgag 92
>31759_mmu-let-7f-1:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 58 agataactatacaacctactgccttccctgag 89
|||||||||||||| ||| |||||||||||||
Sbjct: 58 agataactatacaatctattgccttccctgag 89
>32645_rno-let-7f-1:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 58 agataactatacaacctactgccttccctgag 89
|||||||||||||| ||| |||||||||||||
Sbjct: 58 agataactatacaatctattgccttccctgag 89
>25874_gga-let-7f:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 58 agataactatacaacctactgccttccctga 88
|||||||||||||| ||| ||||||||||||
Sbjct: 57 agataactatacaatctattgccttccctga 87
>26934_eca-let-7f:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 58 agataactatacaacctactgccttccctga 88
|||||||||||||| ||| ||||||||||||
Sbjct: 57 agataactatacaatctattgccttccctga 87
>27323_mdo-let-7f-1:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 58 agataactatacaacctactgccttccctga 88
|||||||||||||| ||| ||||||||||||
Sbjct: 57 agataactatacaatctattgccttccctga 87
>27636_mml-let-7f-1:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 58 agataactatacaacctactgccttccctga 88
|||||||||||||| ||| ||||||||||||
Sbjct: 57 agataactatacaatctattgccttccctga 87
>28346_hsa-let-7f-1:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 58 agataactatacaacctactgccttccctga 88
|||||||||||||| ||| ||||||||||||
Sbjct: 57 agataactatacaatctattgccttccctga 87
>30133_ptr-let-7f-1:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 58 agataactatacaacctactgccttccctga 88
|||||||||||||| ||| ||||||||||||
Sbjct: 56 agataactatacaatctattgccttccctga 86
>30738_ppy-let-7f-1:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 58 agataactatacaacctactgccttccctga 88
|||||||||||||| ||| ||||||||||||
Sbjct: 57 agataactatacaatctattgccttccctga 87
>33115_bta-let-7f-1:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 58 agataactatacaacctactgccttccctga 88
|||||||||||||| ||| ||||||||||||
Sbjct: 57 agataactatacaatctattgccttccctga 87
>34532_fru-let-7h:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 agataactatacaacctactgccttcc 84
||||||||||||||| |||||||||||
Sbjct: 57 agataactatacaacttactgccttcc 83
>34680_tni-let-7h:mirbase
Length = 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 agataactatacaacctactgccttcc 84
||||||||||||||| |||||||||||
Sbjct: 72 agataactatacaacttactgccttcc 98
>25753_xtr-mir-98:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 58 agataactatacaacctactgccttccctg 87
||||||||||||| | ||||||||||||||
Sbjct: 67 agataactatacagcttactgccttccctg 96
>31756_mmu-let-7c-2:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 gggtgaggtagtaggttgtgtggttt 32
||||||||||||||||||| ||||||
Sbjct: 11 gggtgaggtagtaggttgtatggttt 36
>32642_rno-let-7c-2:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 gggtgaggtagtaggttgtgtggttt 32
||||||||||||||||||| ||||||
Sbjct: 11 gggtgaggtagtaggttgtatggttt 36
>34165_dre-let-7a-1:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 agataactatacaacctactg 78
|||||||||||||||||||||
Sbjct: 55 agataactatacaacctactg 75
>34173_dre-let-7c-2:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 5 cagggtgaggtagtaggttgtgtggtttc 33
|||| |||||||||||||||| |||||||
Sbjct: 10 caggctgaggtagtaggttgtatggtttc 38
>34673_tni-let-7a-1:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 cagggtgaggtagtaggttgt 25
|||||||||||||||||||||
Sbjct: 1 cagggtgaggtagtaggttgt 21
>25409_pma-let-7a-2:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 tgaggtagtaggttgtgtggtttcaggg 37
|||||||||||||||| | |||||||||
Sbjct: 17 tgaggtagtaggttgtatagtttcaggg 44
>25412_pma-let-7b:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 4 gcagggtgaggtagtaggtt 23
||||||||||||||||||||
Sbjct: 1 gcagggtgaggtagtaggtt 20
>25678_xtr-let-7c:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 cagggtgaggtagtaggttgtgtggttt 32
|||| |||||||||||||||| ||||||
Sbjct: 11 caggttgaggtagtaggttgtatggttt 38
>26375_tgu-let-7a-1:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 7 gggtgaggtagtaggttgtgtggtttcagggc 38
||||||||||||||||||| | |||| |||||
Sbjct: 8 gggtgaggtagtaggttgtatagttttagggc 39
>26610_cfa-let-7f:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 58 agataactatacaacctactgccttccc 85
|||||||||||||| ||| |||||||||
Sbjct: 51 agataactatacaatctattgccttccc 78
>26932_eca-let-7d:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 11 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctccgaagataactataca 70
|||||||||||||| | |||| ||||||| ||| |||||| | ||||||||||||
Sbjct: 9 gaggtagtaggttgcatagttttagggcagggattttgcccacaaggagataactatacg 68
Query: 71 acctactgcctt 82
|||| |||||||
Sbjct: 69 acctgctgcctt 80
>26994_eca-mir-98:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 56 gaagataactatacaacctactgccttccctg 87
||||||||||||||||| |||| | |||||||
Sbjct: 72 gaagataactatacaacttactactttccctg 103
>27322_mdo-let-7d:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 11 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctccgaagataactataca 70
|||||||||||||| | |||| ||||||| ||| |||||| | || ||||||||||
Sbjct: 17 gaggtagtaggttgcatagttttagggcagggattttgcccacaaggagttaactataca 76
Query: 71 acctactgcctt 82
|||| |||||||
Sbjct: 77 acctgctgcctt 88
>28411_hsa-mir-98:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 56 gaagataactatacaacctactgccttccctg 87
||||||||||||||||| |||| | |||||||
Sbjct: 72 gaagataactatacaacttactactttccctg 103
>30195_ptr-mir-98:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 56 gaagataactatacaacctactgccttccctg 87
||||||||||||||||| |||| | |||||||
Sbjct: 72 gaagataactatacaacttactactttccctg 103
>32705_rno-mir-98:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 56 gaagataactatacaacctactgccttccctg 87
||||||||||||||||| |||| | |||||||
Sbjct: 66 gaagataactatacaacttactactttccctg 97
>33184_bta-mir-98:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 56 gaagataactatacaacctactgccttccctg 87
||||||||||||||||| |||| | |||||||
Sbjct: 72 gaagataactatacaacttactactttccctg 103
>34172_dre-let-7c-1:mirbase
Length = 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 cagggtgaggtagtaggttgtgtggttt 32
|||| |||||||||||||||| ||||||
Sbjct: 18 caggctgaggtagtaggttgtatggttt 45
