miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41392_ptc-MIR171l:mirbase
          Length = 112

 Score =  222 bits (112), Expect = 4e-59
 Identities = 112/112 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagaagtagacacggtgtgatattggtccggctcatcttctgtgcataagcatctgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggagaagtagacacggtgtgatattggtccggctcatcttctgtgcataagcatctgaag 60

                                                               
Query: 61  ttcttcactcatgaagacgagccgaatcaatatcactcttgtatgcttcttc 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttcttcactcatgaagacgagccgaatcaatatcactcttgtatgcttcttc 112




>41499_ptc-MIR479:mirbase
          Length = 85

 Score =  168 bits (85), Expect = 5e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 15 ggtgtgatattggtccggctcatcttctgtgcataagcatctgaagttcttcactcatga 74
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtgtgatattggtccggctcatcttctgtgcataagcatctgaagttcttcactcatga 60

                                   
Query: 75 agacgagccgaatcaatatcactct 99
          |||||||||||||||||||||||||
Sbjct: 61 agacgagccgaatcaatatcactct 85




>41393_ptc-MIR171m:mirbase
          Length = 101

 Score = 81.8 bits (41), Expect = 1e-16
 Identities = 91/106 (85%), Gaps = 5/106 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaagtagacacggtgtgatattggtccggctcatcttctgtgcataagcatctgaagttc 63
           |||| ||||| || ||| ||||| |||||||||||||||||  ||  ||||| |||||||
Sbjct: 1   gaagcagacatggcgtggtattgatccggctcatcttctgt--atttgcatcagaagttc 58

                                                         
Query: 64  ttcactcatgaagacgagccgaatcaatatcactcttgtatgcttc 109
           ||| ||   ||||||||||||||||||||||||||||||| |||||
Sbjct: 59  ttcgct---gaagacgagccgaatcaatatcactcttgtacgcttc 101




>41258_csi-MIR479:mirbase
          Length = 147

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                                
Query: 75  agacgagccgaatcaatatcactcttgtatgcttctt 111
           |||||||||||||||||||||||||||||||||||||
Sbjct: 94  agacgagccgaatcaatatcactcttgtatgcttctt 130



 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 1  ggagaagtagacacggtgtgatattggtccggctcatctt 40
          ||||||||||||| |||||||||||||| |||||||||||
Sbjct: 4  ggagaagtagacatggtgtgatattggttcggctcatctt 43




>41232_csi-MIR171b:mirbase
          Length = 165

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                                
Query: 75  agacgagccgaatcaatatcactcttgtatgcttctt 111
           |||||||||||||||||||||||||||||||||||||
Sbjct: 119 agacgagccgaatcaatatcactcttgtatgcttctt 155



 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 1  ggagaagtagacacggtgtgatattggtccggctcatctt 40
          ||||||||||||| |||||||||||||| |||||||||||
Sbjct: 29 ggagaagtagacatggtgtgatattggttcggctcatctt 68




>41394_ptc-MIR171n:mirbase
          Length = 101

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 72  tgaagacgagccgaatcaatatcactcttgtatgcttc 109
           |||||||||||||||||||||||||||||||| |||||
Sbjct: 64  tgaagacgagccgaatcaatatcactcttgtacgcttc 101




>41686_vvi-MIR479:mirbase
          Length = 94

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 74  aagacgagccgaatcaatatcactcttgtatgcttc 109
           ||||||||||||| ||||||||||||||||||||||
Sbjct: 59  aagacgagccgaaccaatatcactcttgtatgcttc 94



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 7  gtagacacggtgtgatattggtccggctcatcttct 42
          ||||||| |||||| ||||||| |||||||||||||
Sbjct: 1  gtagacatggtgtggtattggttcggctcatcttct 36




>40456_gma-MIR171b:mirbase
          Length = 92

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 75  agacgagccgaatcaatatcactcttgtatgctt 108
           |||||||||||||||||||||||||||| |||||
Sbjct: 59  agacgagccgaatcaatatcactcttgtttgctt 92



 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 8  tagacacggtgtgatattggtccggctcatctt 40
          ||||||||| ||||||||||| |||||||||||
Sbjct: 1  tagacacggcgtgatattggtacggctcatctt 33




>40455_gma-MIR171b:mirbase
          Length = 92

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 75  agacgagccgaatcaatatcactcttgtatgctt 108
           |||||||||||||||||||||||||||| |||||
Sbjct: 59  agacgagccgaatcaatatcactcttgtttgctt 92



 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 8  tagacacggtgtgatattggtccggctcatctt 40
          ||||||||| ||||||||||| |||||||||||
Sbjct: 1  tagacacggcgtgatattggtacggctcatctt 33




>41064_ghr-MIR479:mirbase
          Length = 97

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 78  cgagccgaatcaatatcactcttgtatgctt 108
           ||||||||||||||||||||| |||||||||
Sbjct: 63  cgagccgaatcaatatcactcatgtatgctt 93



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                  
Query: 1  ggagaagtagacacggtgtgatattggtccggctcatctt 40
          |||| ||||||||||  ||||||||||| |||||||||||
Sbjct: 1  ggaggagtagacacgacgtgatattggttcggctcatctt 40