miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41401_ptc-MIR172g:mirbase
Length = 143
Score = 242 bits (122), Expect = 6e-65
Identities = 136/143 (95%)
Strand = Plus / Plus
Query: 1 ctgtttgcctatggagcatcatcaagattcacaagctttattagggctagtgtgtggtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtttgcctatggagcatcatcaagattcacaagctttattagggctagtgtgtggtga 60
Query: 61 tgatggtggcttttggtggtcccnnnnnnncaatccaatagccctttgaattgggaatct 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 tgatggtggcttttggtggtccctttttttcaatccaatagccctttgaattgggaatct 120
Query: 121 tgatgatgctgcagcggcaataa 143
|||||||||||||||||||||||
Sbjct: 121 tgatgatgctgcagcggcaataa 143
>41402_ptc-MIR172h:mirbase
Length = 143
Score = 178 bits (90), Expect = 7e-46
Identities = 128/143 (89%)
Strand = Plus / Plus
Query: 1 ctgtttgcctatggagcatcatcaagattcacaagctttattagggctagtgtgtggtga 60
||||||||| |||||||| ||||||||||||||| |||||||||||||| | |||||||
Sbjct: 1 ctgtttgccgatggagcaccatcaagattcacaaactttattagggctaataagtggtga 60
Query: 61 tgatggtggcttttggtggtcccnnnnnnncaatccaatagccctttgaattgggaatct 120
||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||
Sbjct: 61 tgatggtggcttttggtggtcccttcgtttcaacccaatagccatttgaattgggaatct 120
Query: 121 tgatgatgctgcagcggcaataa 143
|||||||||||||||||||||||
Sbjct: 121 tgatgatgctgcagcggcaataa 143
>40366_rco-MIR172:mirbase
Length = 144
Score = 67.9 bits (34), Expect = 2e-12
Identities = 47/50 (94%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 91 caatccaatag-ccctttgaattgggaatcttgatgatgctgcagcggca 139
||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 95 caatccaatagtccctttgatatgggaatcttgatgatgctgcagcggca 144
Score = 61.9 bits (31), Expect = 1e-10
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 11 atggagcatcatcaagattcacaagctttat-tagggctagtg 52
|||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 4 atggagcatcatcaagattcacaaactttatctagggctagtg 46
>41633_vvi-MIR172c:mirbase
Length = 138
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgcagcggcaataa 143
||||||||||||||||||||||||||||||||
Sbjct: 106 tgggaatcttgatgatgctgcagcggcaataa 137
>41124_tcc-MIR172a:mirbase
Length = 154
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgcagcggcaataa 143
||||||||||||||||||||||||||||||||
Sbjct: 113 tgggaatcttgatgatgctgcagcggcaataa 144
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 ctgtttgcctatggagcatcatcaagattcacaa 34
|||||||| ||||||||||||||||||||||||
Sbjct: 8 ctgtttgctgatggagcatcatcaagattcacaa 41
>40462_gma-MIR172e:mirbase
Length = 153
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 ctgtttgcctatggagcatcatcaagattcacaagcttta 40
||||||||| |||||||||||||||||||||||||||||
Sbjct: 11 ctgtttgccggtggagcatcatcaagattcacaagcttta 50
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgcagcggcaataa 143
|||||||||||||||||||||||| |||||||
Sbjct: 112 tgggaatcttgatgatgctgcagcagcaataa 143
>40461_gma-MIR172d:mirbase
Length = 150
Score = 63.9 bits (32), Expect = 3e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 100 agccctttgaattgggaatcttgatgatgctgcagcggcaataa 143
|||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 97 agccctttgatatgggaatcttgatgatgctgcagcagcaataa 140
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 atggagcatcatcaagattcacaagctt 38
||||||||||||||||||||||||||||
Sbjct: 21 atggagcatcatcaagattcacaagctt 48
>40460_gma-MIR172c:mirbase
Length = 153
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 ctgtttgcctatggagcatcatcaagattcacaagcttta 40
||||||||| |||||||||||||||||||||||||||||
Sbjct: 11 ctgtttgccggtggagcatcatcaagattcacaagcttta 50
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgcagcggcaataa 143
|||||||||||||||||||||||| |||||||
Sbjct: 112 tgggaatcttgatgatgctgcagcagcaataa 143
>40066_ath-MIR172d:mirbase
Length = 124
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcggcaat 141
|||||||||||||||||||||||||||
Sbjct: 89 gaatcttgatgatgctgcagcggcaat 115
>39855_aly-MIR172d:mirbase
Length = 163
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcggcaat 141
|||||||||||||||||||||||||||
Sbjct: 113 gaatcttgatgatgctgcagcggcaat 139
>41400_ptc-MIR172f:mirbase
Length = 161
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcggcaataa 143
||||||||||||||||||| |||||||||
Sbjct: 133 gaatcttgatgatgctgcatcggcaataa 161
>41399_ptc-MIR172e:mirbase
Length = 133
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgcagcggcaa 140
|||||||||||||||||||||| ||||||
Sbjct: 102 tgggaatcttgatgatgctgcatcggcaa 130
>41398_ptc-MIR172d:mirbase
Length = 182
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 gcatcatcaagattcacaagcttta 40
|||||||||||||||||||||||||
Sbjct: 16 gcatcatcaagattcacaagcttta 40
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgcagcggcaa 140
|||||||||||||||||||||| ||||||
Sbjct: 151 tgggaatcttgatgatgctgcatcggcaa 179
>41396_ptc-MIR172b:mirbase
Length = 140
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcggcaataa 143
||||||||||||||||||| |||||||||
Sbjct: 112 gaatcttgatgatgctgcatcggcaataa 140
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tggagcatcatcaagattcaca 33
||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcaca 33
>41235_csi-MIR172c:mirbase
Length = 163
Score = 50.1 bits (25), Expect = 5e-07
Identities = 52/60 (86%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 12 tggagcatcatcaagattcacaagctttattagggctagtgtgtggtgatgatggtggct 71
||||||| ||||||||||||||| | |||||||| ||||| |||| ||| |||||||||
Sbjct: 13 tggagcaccatcaagattcacaaac--tattagggttagtgagtggagataatggtggct 70
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 ggaatcttgatgatgctgcagc 135
||||||||||||||||||||||
Sbjct: 120 ggaatcttgatgatgctgcagc 141
>41128_tcc-MIR172e:mirbase
Length = 189
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcggcaataa 143
||||||||||||||||||| |||||||||
Sbjct: 150 gaatcttgatgatgctgcatcggcaataa 178
>41632_vvi-MIR172b:mirbase
Length = 118
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 115 gaatcttgatgatgctgcagcggcaata 142
||||||||||||||||||| ||||||||
Sbjct: 28 gaatcttgatgatgctgcatcggcaata 1
>41631_vvi-MIR172a:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 115 gaatcttgatgatgctgcagcggcaata 142
||||||||||||||||||| ||||||||
Sbjct: 28 gaatcttgatgatgctgcatcggcaata 1
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 2 tgtttgcctatggagcatcatcaagattcaca 33
||||||| ||| |||||||||||||||||||
Sbjct: 109 tgtttgcgcatgtagcatcatcaagattcaca 78
>41126_tcc-MIR172c:mirbase
Length = 163
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 103 cctttgaattgggaatcttgatgatgctgca 133
||||| || ||||||||||||||||||||||
Sbjct: 112 cctttcaaatgggaatcttgatgatgctgca 142
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 16 gcatcatcaagattcacaagcttta 40
||||||||||||||||||| |||||
Sbjct: 26 gcatcatcaagattcacaaacttta 50
>41050_ghr-MIR172:mirbase
Length = 125
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tggagcatcatcaagattcacaa 34
|||||||||||||||||||||||
Sbjct: 17 tggagcatcatcaagattcacaa 39
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 110 attgggaatcttgatgatgctgcagcggcaataa 143
|||| ||||| |||||||||||||| ||||||||
Sbjct: 86 attgagaatcctgatgatgctgcagtggcaataa 119
>40065_ath-MIR172c:mirbase
Length = 133
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tggagcatcatcaagattcacaa 34
|||||||||||||||||||||||
Sbjct: 17 tggagcatcatcaagattcacaa 39
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcggcaat 141
||||||||||||||||||||| |||||
Sbjct: 99 gaatcttgatgatgctgcagctgcaat 125
>39854_aly-MIR172c:mirbase
Length = 133
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tggagcatcatcaagattcacaa 34
|||||||||||||||||||||||
Sbjct: 17 tggagcatcatcaagattcacaa 39
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcggcaat 141
||||||||||||||||||||| |||||
Sbjct: 99 gaatcttgatgatgctgcagctgcaat 125
>39852_aly-MIR172a:mirbase
Length = 149
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcggcaat 141
||||||||||||||||||| |||||||
Sbjct: 100 gaatcttgatgatgctgcatcggcaat 126
>42779_zma-MIR172e:mirbase
Length = 174
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgca 133
||||||||||||||||||||||
Sbjct: 133 tgggaatcttgatgatgctgca 154
>42558_sbi-MIR172b:mirbase
Length = 170
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgca 133
||||||||||||||||||||||
Sbjct: 148 tgggaatcttgatgatgctgca 169
>41991_osa-MIR172b:mirbase
Length = 238
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgca 133
||||||||||||||||||||||
Sbjct: 206 tgggaatcttgatgatgctgca 227
>41768_bdi-MIR172b:mirbase
Length = 254
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgca 133
||||||||||||||||||||||
Sbjct: 202 tgggaatcttgatgatgctgca 223
>41767_bdi-MIR172a:mirbase
Length = 153
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcggcaa 140
||||||||||||||||||| ||||||
Sbjct: 100 gaatcttgatgatgctgcatcggcaa 125
>41184_aqc-MIR172b:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgca 133
||||||||||||||||||||||
Sbjct: 84 tgggaatcttgatgatgctgca 105
>40067_ath-MIR172e:mirbase
Length = 125
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgca 133
||||||||||||||||||||||
Sbjct: 93 tgggaatcttgatgatgctgca 114
>39856_aly-MIR172e:mirbase
Length = 133
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgca 133
||||||||||||||||||||||
Sbjct: 96 tgggaatcttgatgatgctgca 117
>41125_tcc-MIR172b:mirbase
Length = 160
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcggcaataa 143
||||||||||||||||||| |||| ||||
Sbjct: 121 gaatcttgatgatgctgcatcggccataa 149
>41233_csi-MIR172a:mirbase
Length = 162
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcggc 138
||||||||||||||||||| ||||
Sbjct: 116 gaatcttgatgatgctgcaacggc 139
>40702_mtr-MIR172:mirbase
Length = 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 tggagcatcatcaagattcacaag 35
||||||||||||| ||||||||||
Sbjct: 6 tggagcatcatcaggattcacaag 29
>40459_gma-MIR172b:mirbase
Length = 153
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 2 tgtttgcctatggagcatcatcaagattcaca 33
||||||| ||| |||||||||||||||||||
Sbjct: 12 tgtttgcggatgtagcatcatcaagattcaca 43
>40063_ath-MIR172a:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcggc 138
||||||||||||||||||| ||||
Sbjct: 79 gaatcttgatgatgctgcatcggc 102
