miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41405_ptc-MIR319b:mirbase
Length = 185
Score = 367 bits (185), Expect = e-102
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 1 taatagataagagagcttttttcggtccacttatagatagtaatatgatttaattagtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taatagataagagagcttttttcggtccacttatagatagtaatatgatttaattagtta 60
Query: 61 ccgactcattcatccaaatactgagttatgagctaagattacccagtaaatgaatgagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccgactcattcatccaaatactgagttatgagctaagattacccagtaaatgaatgagtg 120
Query: 121 atgcgggagacaaattaaatcttaaacttcctatcattggactgaagggagctcccttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgcgggagacaaattaaatcttaaacttcctatcattggactgaagggagctcccttta 180
Query: 181 ctgtt 185
|||||
Sbjct: 181 ctgtt 185
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 143 bits (72), Expect = 5e-35
Identities = 155/182 (85%), Gaps = 3/182 (1%)
Strand = Plus / Plus
Query: 1 taatagataagagagcttttttcggtccacttatagatagtaatatgatttaattagtta 60
|||||| |||||||||||| ||| ||||||| || | | ||| || ||||||||||| |
Sbjct: 1 taatagctaagagagctttcttcagtccactcatgggtggtagtaggatttaattagctg 60
Query: 61 ccgactcattcatccaaatactgagttatgagctaag---attacccagtaaatgaatga 117
|||||||||||||||||||||||||||| | ||| |||||||||||||||| |||
Sbjct: 61 ccgactcattcatccaaatactgagttaaaggacaaggagattacccagtaaatgagtga 120
Query: 118 gtgatgcgggagacaaattaaatcttaaacttcctatcattggactgaagggagctccct 177
|||||||||||||||||| |||| ||| |||||| | |||||||||||||||||||||
Sbjct: 121 atgatgcgggagacaaattgaatcctaagcttcctgtacttggactgaagggagctccct 180
Query: 178 tt 179
||
Sbjct: 181 tt 182
>41282_ctr-MIR319:mirbase
Length = 186
Score = 113 bits (57), Expect = 5e-26
Identities = 140/167 (83%), Gaps = 3/167 (1%)
Strand = Plus / Plus
Query: 13 gagcttttttcggtccacttatagatagtaatatgatttaattagttaccgactcattca 72
||||||| |||||||||||||| | | | |||| ||||||||||| | | ||||||||||
Sbjct: 10 gagctttcttcggtccacttatgggtggcaataggatttaattagctgctgactcattca 69
Query: 73 tccaaatactgagttatgagctaagat---tacccagtaaatgaatgagtgatgcgggag 129
|||||||||| ||| | | | | || |||||||||||||| ||| |||||||||||
Sbjct: 70 tccaaatacttagtaaagggtcgaaatggatacccagtaaatgagtgaatgatgcgggag 129
Query: 130 acaaattaaatcttaaacttcctatcattggactgaagggagctccc 176
||||||| |||||||| |||||| | ||||||||||||||||||||
Sbjct: 130 acaaattgaatcttaagcttcctgtgcttggactgaagggagctccc 176
>40367_rco-MIR319a:mirbase
Length = 211
Score = 111 bits (56), Expect = 2e-25
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 99 ttacccagtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcatt 158
||||||||||||||| ||| |||||||||||||||||| |||||||| |||||| | ||
Sbjct: 128 ttacccagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtactt 187
Query: 159 ggactgaagggagctccctttact 182
||||||||||||||||||||||||
Sbjct: 188 ggactgaagggagctccctttact 211
Score = 67.9 bits (34), Expect = 3e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 47 gatttaattagttaccgactcattcatccaaatactgagtta 88
||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 41 gatttaattagctgccgactcattcatccaaatactgagtta 82
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 103 bits (52), Expect = 5e-23
Identities = 144/175 (82%), Gaps = 6/175 (3%)
Strand = Plus / Plus
Query: 9 aagagagcttttttcggtccacttatagatagtaatatgatttaattagttaccgactca 68
||||||||||| ||| ||||||| || | | | | || |||| |||||| | ||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactca 68
Query: 69 ttcatccaaatactgagttatgagctaagattacccagtaaatgaatgagtgatgcggga 128
||||||||||||||| |||| | || |||||||||||||| ||| ||||||||||
Sbjct: 69 ttcatccaaatactgtgttaag------gactacccagtaaatgattgaatgatgcggga 122
Query: 129 gacaaattaaatcttaaacttcctatcattggactgaagggagctccctttactg 183
|||||||| ||||||| || ||| | |||||||||||||||||||||| ||||
Sbjct: 123 gacaaattggatcttaagctccctgtgcttggactgaagggagctcccttcactg 177
>40704_mtr-MIR319b:mirbase
Length = 180
Score = 87.7 bits (44), Expect = 3e-18
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 108 aaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactgaag 167
|||||| ||| |||||||||||||||||| |||||||| ||||||| |||||||||||
Sbjct: 107 aaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaag 166
Query: 168 ggagctcccttt 179
||||||||||||
Sbjct: 167 ggagctcccttt 178
>40465_gma-MIR319b:mirbase
Length = 208
Score = 83.8 bits (42), Expect = 4e-17
Identities = 145/176 (82%), Gaps = 5/176 (2%)
Strand = Plus / Plus
Query: 8 taagagagcttttttcggtccacttatagatagtaatatgattt-aattagttaccgact 66
|||||||||||| ||| |||||||||| | | |||| ||||| |||||| | ||||||
Sbjct: 18 taagagagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgact 77
Query: 67 cattcatccaaatactgagttatgagctaagat---tacccagtaaatgaatgagtgatg 123
||||||||||||| |||||| | ||| |||| ||| ||| |||||| ||| |||||
Sbjct: 78 cattcatccaaatgctgagtgaa-agcgaagaaagatactcagcaaatgagtgaatgatg 136
Query: 124 cgggagacaaattaaatcttaaacttcctatcattggactgaagggagctcccttt 179
||||||||||||| | |||||| ||||| | |||||||||||||||||||||||
Sbjct: 137 cgggagacaaattgattcttaagtttcctgtacttggactgaagggagctcccttt 192
>40464_gma-MIR319a:mirbase
Length = 207
Score = 75.8 bits (38), Expect = 1e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 110 atgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactgaaggg 169
|||| ||| |||||||||||||||||| |||||||| ||||| | |||||||||||||
Sbjct: 122 atgagtgaatgatgcgggagacaaattgaatcttaagtttcctgtacttggactgaaggg 181
Query: 170 agctcccttt 179
||||||||||
Sbjct: 182 agctcccttt 191
>40070_ath-MIR319b:mirbase
Length = 172
Score = 58.0 bits (29), Expect = 2e-09
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 106 gtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttc-ctatcattggactg 164
|||||||||||| ||||||| |||||||||| | |||| ||||| |||| ||||||||
Sbjct: 101 gtaaatgaatgaatgatgcgagagacaaattgagtctt-cacttctctatgcttggactg 159
Query: 165 aagggagctccct 177
|||||||||||||
Sbjct: 160 aagggagctccct 172
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 62 cgactcattcatccaaatac 81
||||||||||||||||||||
Sbjct: 55 cgactcattcatccaaatac 74
>39859_aly-MIR319b:mirbase
Length = 246
Score = 58.0 bits (29), Expect = 2e-09
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 106 gtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttc-ctatcattggactg 164
|||||||||||| ||||||| |||||||||| | |||| ||||| |||| ||||||||
Sbjct: 140 gtaaatgaatgaatgatgcgagagacaaattgagtctt-cacttctctatgcttggactg 198
Query: 165 aagggagctccct 177
|||||||||||||
Sbjct: 199 aagggagctccct 211
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 62 cgactcattcatccaaatac 81
||||||||||||||||||||
Sbjct: 94 cgactcattcatccaaatac 113
>40069_ath-MIR319a:mirbase
Length = 176
Score = 56.0 bits (28), Expect = 1e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 43 atatgatttaattagttaccgactcattcatccaaatactgagt 86
|||||||| |||||| | ||||||||||||||||||||| ||||
Sbjct: 36 atatgattcaattagcttccgactcattcatccaaataccgagt 79
Score = 46.1 bits (23), Expect = 9e-06
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 107 taaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactgaa 166
||||||||||| |||||||| ||||||||| ||| | | | || | |||||||||||
Sbjct: 104 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 163
Query: 167 gggagctccct 177
|||||||||||
Sbjct: 164 gggagctccct 174
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 157 ttggactgaagggagctcccttta 180
||||||||||||||||||||||||
Sbjct: 165 ttggactgaagggagctcccttta 188
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 157 ttggactgaagggagctcccttta 180
||||||||||||||||||||||||
Sbjct: 168 ttggactgaagggagctcccttta 191
>41185_aqc-MIR319:mirbase
Length = 177
Score = 48.1 bits (24), Expect = 2e-06
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 106 gtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactga 165
|||||||||||| |||| ||||||| |||| |||||| |||| | | |||||||||
Sbjct: 104 gtaaatgaatgaatgatccgggagattaattggatcttatgcttcttgtacttggactga 163
Query: 166 agggagctccct 177
||||||||||||
Sbjct: 164 agggagctccct 175
>40369_rco-MIR319c:mirbase
Length = 188
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 157 ttggactgaagggagctcccttta 180
||||||||||||||||||||||||
Sbjct: 163 ttggactgaagggagctcccttta 186
>39858_aly-MIR319a:mirbase
Length = 221
Score = 48.1 bits (24), Expect = 2e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 43 atatgatttaattagttaccgactcattcatccaaatactgagt 86
||||||| |||||| | ||||||||||||||||||||| ||||
Sbjct: 59 atatgatccaattagcttccgactcattcatccaaataccgagt 102
Score = 46.1 bits (23), Expect = 9e-06
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 107 taaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactgaa 166
||||||||||| |||||||| ||||||||| ||| | | | || | |||||||||||
Sbjct: 127 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 186
Query: 167 gggagctccct 177
|||||||||||
Sbjct: 187 gggagctccct 197
>41639_vvi-MIR319g:mirbase
Length = 222
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 154 tcattggactgaagggagctccc 176
|||||||||||||||||||||||
Sbjct: 189 tcattggactgaagggagctccc 211
>40703_mtr-MIR319:mirbase
Length = 207
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 157 ttggactgaagggagctcccttt 179
|||||||||||||||||||||||
Sbjct: 169 ttggactgaagggagctcccttt 191
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 ttggactgaagggagctccctt 178
||||||||||||||||||||||
Sbjct: 162 ttggactgaagggagctccctt 183
>41635_vvi-MIR319b:mirbase
Length = 194
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 ttggactgaagggagctccctt 178
||||||||||||||||||||||
Sbjct: 163 ttggactgaagggagctccctt 184
>39740_smo-MIR319:mirbase
Length = 215
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 ttggactgaagggagctccctt 178
||||||||||||||||||||||
Sbjct: 186 ttggactgaagggagctccctt 207
>42642_tae-MIR319:mirbase
Length = 211
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 157 ttggactgaagggagctccct 177
|||||||||||||||||||||
Sbjct: 184 ttggactgaagggagctccct 204
>41770_bdi-MIR319:mirbase
Length = 280
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 157 ttggactgaagggagctccct 177
|||||||||||||||||||||
Sbjct: 226 ttggactgaagggagctccct 246
>41411_ptc-MIR319h:mirbase
Length = 195
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 155 cattggactgaagggagctcc 175
|||||||||||||||||||||
Sbjct: 163 cattggactgaagggagctcc 183
>41408_ptc-MIR319e:mirbase
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 155 cattggactgaagggagctcc 175
|||||||||||||||||||||
Sbjct: 162 cattggactgaagggagctcc 182
>40370_rco-MIR319d:mirbase
Length = 187
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 155 cattggactgaagggagctcc 175
|||||||||||||||||||||
Sbjct: 160 cattggactgaagggagctcc 180
>40368_rco-MIR319b:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 157 ttggactgaagggagctccct 177
|||||||||||||||||||||
Sbjct: 154 ttggactgaagggagctccct 174
>39484_ppt-MIR319e:mirbase
Length = 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 ttggactgaagggagctccc 176
||||||||||||||||||||
Sbjct: 148 ttggactgaagggagctccc 167
>39483_ppt-MIR319d:mirbase
Length = 170
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 ttggactgaagggagctccc 176
||||||||||||||||||||
Sbjct: 146 ttggactgaagggagctccc 165
>39482_ppt-MIR319c:mirbase
Length = 189
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 ttggactgaagggagctccc 176
||||||||||||||||||||
Sbjct: 155 ttggactgaagggagctccc 174
