miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00705;mir-202;AAKN02002831.1/62715-62801 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 113 bits (57), Expect = 4e-25
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 12 gctgttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgc 71
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||
Sbjct: 4 gctgttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatatggc 63
Query: 72 atgggaagatggagcagtgag 92
||||||| |||||||| ||||
Sbjct: 64 atgggaaaatggagcaatgag 84
>RF00705;mir-202;ABRQ01469264.1/9221-9135 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 105 bits (53), Expect = 1e-22
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 15 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 74
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 66
Query: 75 ggaagatgg 83
|||| ||||
Sbjct: 67 ggaaaatgg 75
>RF00705;mir-202;CABD01575422.1/939-1025 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 87
Score = 95.6 bits (48), Expect = 1e-19
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 15 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 74
|||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgaagatctggcctaaagaggtatagggcatg 66
Query: 75 ggaa 78
||||
Sbjct: 67 ggaa 70
>RF00705;mir-202;AAIY01420185.1/327-241 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 87.7 bits (44), Expect = 2e-17
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 18 cctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcat 73
||||||||||||||||||||||||||| || ||||||| |||||||||||||||||
Sbjct: 10 cctttttcctatgcatatacttctttgagggtctggtccaaagaggtatagcgcat 65
>RF00705;mir-202;AADN02046542.1/8507-8421 9031:Gallus gallus
(chicken)
Length = 87
Score = 75.8 bits (38), Expect = 9e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 14 tgttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcat 73
||||||||||||||||||||||||||||||| | | || |||||||||| |||| ||||
Sbjct: 6 tgttcctttttcctatgcatatacttctttgagagtttgatctaaagaggcatagagcat 65
Query: 74 gggaagatgg 83
||||| ||||
Sbjct: 66 gggaaaatgg 75
>RF00705;mir-202;BAAF04099470.1/3897-3811 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 65.9 bits (33), Expect = 9e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 12 gctgttcctttttcctatgcatatacttctttg 44
|||||||||||||||||||||||||||||||||
Sbjct: 4 gctgttcctttttcctatgcatatacttctttg 36
>RF00705;mir-202;ABQO010018421.1/2483-2569 9315:Macropus eugenii
(tammar wallaby)
Length = 87
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 15 gttcctttttcctatgcatatacttctttg 44
||||||||||||||||||||||||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttg 36
>RF00705;mir-202;AC149072.1/21212-21298 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 87
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 12 gctgttcctttttcctatgcatatacttctttg 44
|||||||||||||||||||||||||| ||||||
Sbjct: 4 gctgttcctttttcctatgcatatacctctttg 36
