miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41446_ptc-MIR398b:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 agggttccgacaggagcggccttgggtcacatgtggcggcatccaatgtacttcatgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggttccgacaggagcggccttgggtcacatgtggcggcatccaatgtacttcatgtgt 60
Query: 61 tctcaggtcgcccctgccgggcttc 85
|||||||||||||||||||||||||
Sbjct: 61 tctcaggtcgcccctgccgggcttc 85
>41447_ptc-MIR398c:mirbase
Length = 97
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 54 catgtgttctcaggtcgcccctgccgggctt 84
|||||||||||||||||||||||||||||||
Sbjct: 66 catgtgttctcaggtcgcccctgccgggctt 96
>40382_rco-MIR398b:mirbase
Length = 126
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 52 ttcatgtgttctcaggtcgcccctgccggg 81
||||||||||||||||||||||||||||||
Sbjct: 97 ttcatgtgttctcaggtcgcccctgccggg 126
>42040_osa-MIR398b:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 tgtgttctcaggtcgcccctgccggg 81
||||||||||||||||||||||||||
Sbjct: 58 tgtgttctcaggtcgcccctgccggg 83
>41144_tcc-MIR398a:mirbase
Length = 125
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 atgtgttctcaggtcgcccctgccgggctt 84
||||||||||||||||||||||| ||||||
Sbjct: 84 atgtgttctcaggtcgcccctgcagggctt 113
>41667_vvi-MIR398c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tcatgtgttctcaggtcgcccctgc 77
|||||||||||||||||||||||||
Sbjct: 55 tcatgtgttctcaggtcgcccctgc 79
>41666_vvi-MIR398b:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tcatgtgttctcaggtcgcccctgc 77
|||||||||||||||||||||||||
Sbjct: 55 tcatgtgttctcaggtcgcccctgc 79
>40729_mtr-MIR398b:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tcatgtgttctcaggtcgcccctgc 77
|||||||||||||||||||||||||
Sbjct: 59 tcatgtgttctcaggtcgcccctgc 83
>41191_aqc-MIR398b:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 catgtgttctcaggtcgcccctgc 77
||||||||||||||||||||||||
Sbjct: 70 catgtgttctcaggtcgcccctgc 93
>41801_bdi-MIR398c:mirbase
Length = 131
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 catgtgttctcaggtcgcccctg 76
|||||||||||||||||||||||
Sbjct: 85 catgtgttctcaggtcgcccctg 107
>41799_bdi-MIR398a:mirbase
Length = 150
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 catgtgttctcaggtcgcccctg 76
|||||||||||||||||||||||
Sbjct: 94 catgtgttctcaggtcgcccctg 116
>42645_tae-MIR398:mirbase
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tcatgtgttctcaggtcgcccc 74
||||||||||||||||||||||
Sbjct: 82 tcatgtgttctcaggtcgcccc 103
>40730_mtr-MIR398c:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tgtgttctcaggtcgcccctgc 77
||||||||||||||||||||||
Sbjct: 62 tgtgttctcaggtcgcccctgc 83
>40091_ath-MIR398c:mirbase
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 ttcatgtgttctcaggtcgcccctgc 77
|||||||||||||||||| |||||||
Sbjct: 81 ttcatgtgttctcaggtcacccctgc 106
>40090_ath-MIR398b:mirbase
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 ttcatgtgttctcaggtcgcccctgc 77
|||||||||||||||||| |||||||
Sbjct: 82 ttcatgtgttctcaggtcacccctgc 107
>42818_zma-MIR398b:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 catgtgttctcaggtcgcccc 74
|||||||||||||||||||||
Sbjct: 85 catgtgttctcaggtcgcccc 105
>42817_zma-MIR398a:mirbase
Length = 140
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 catgtgttctcaggtcgcccc 74
|||||||||||||||||||||
Sbjct: 117 catgtgttctcaggtcgcccc 137
>42588_sbi-MIR398:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 catgtgttctcaggtcgcccc 74
|||||||||||||||||||||
Sbjct: 86 catgtgttctcaggtcgcccc 106
>39882_aly-MIR398b:mirbase
Length = 142
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 54 catgtgttctcaggtcgcccctgc 77
|||||||||||||||| |||||||
Sbjct: 89 catgtgttctcaggtcacccctgc 112
