miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41447_ptc-MIR398c:mirbase
Length = 97
Score = 192 bits (97), Expect = 3e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 aggattcctacaggagcgacctgaaatcacatgtgggctgcaccctcctgggttatcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggattcctacaggagcgacctgaaatcacatgtgggctgcaccctcctgggttatcttg 60
Query: 61 agcaacatgtgttctcaggtcgcccctgccgggcttt 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 agcaacatgtgttctcaggtcgcccctgccgggcttt 97
>41446_ptc-MIR398b:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 66 catgtgttctcaggtcgcccctgccgggctt 96
|||||||||||||||||||||||||||||||
Sbjct: 54 catgtgttctcaggtcgcccctgccgggctt 84
>40382_rco-MIR398b:mirbase
Length = 126
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 66 catgtgttctcaggtcgcccctgccggg 93
||||||||||||||||||||||||||||
Sbjct: 99 catgtgttctcaggtcgcccctgccggg 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 8 ctacaggagcgacctga-aatcacatgtgg 36
||||||||||||||||| ||||||||||||
Sbjct: 1 ctacaggagcgacctgagaatcacatgtgg 30
>41144_tcc-MIR398a:mirbase
Length = 125
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 67 atgtgttctcaggtcgcccctgccgggcttt 97
||||||||||||||||||||||| |||||||
Sbjct: 84 atgtgttctcaggtcgcccctgcagggcttt 114
>42040_osa-MIR398b:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 68 tgtgttctcaggtcgcccctgccggg 93
||||||||||||||||||||||||||
Sbjct: 58 tgtgttctcaggtcgcccctgccggg 83
>41667_vvi-MIR398c:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 catgtgttctcaggtcgcccctgc 89
||||||||||||||||||||||||
Sbjct: 56 catgtgttctcaggtcgcccctgc 79
>41666_vvi-MIR398b:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 catgtgttctcaggtcgcccctgc 89
||||||||||||||||||||||||
Sbjct: 56 catgtgttctcaggtcgcccctgc 79
>41191_aqc-MIR398b:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 catgtgttctcaggtcgcccctgc 89
||||||||||||||||||||||||
Sbjct: 70 catgtgttctcaggtcgcccctgc 93
>40729_mtr-MIR398b:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 catgtgttctcaggtcgcccctgc 89
||||||||||||||||||||||||
Sbjct: 60 catgtgttctcaggtcgcccctgc 83
>41801_bdi-MIR398c:mirbase
Length = 131
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 66 catgtgttctcaggtcgcccctg 88
|||||||||||||||||||||||
Sbjct: 85 catgtgttctcaggtcgcccctg 107
>41799_bdi-MIR398a:mirbase
Length = 150
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 66 catgtgttctcaggtcgcccctg 88
|||||||||||||||||||||||
Sbjct: 94 catgtgttctcaggtcgcccctg 116
>40730_mtr-MIR398c:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 tgtgttctcaggtcgcccctgc 89
||||||||||||||||||||||
Sbjct: 62 tgtgttctcaggtcgcccctgc 83
>42818_zma-MIR398b:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 66 catgtgttctcaggtcgcccc 86
|||||||||||||||||||||
Sbjct: 85 catgtgttctcaggtcgcccc 105
>42817_zma-MIR398a:mirbase
Length = 140
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 66 catgtgttctcaggtcgcccc 86
|||||||||||||||||||||
Sbjct: 117 catgtgttctcaggtcgcccc 137
>42645_tae-MIR398:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 66 catgtgttctcaggtcgcccc 86
|||||||||||||||||||||
Sbjct: 83 catgtgttctcaggtcgcccc 103
>42588_sbi-MIR398:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 66 catgtgttctcaggtcgcccc 86
|||||||||||||||||||||
Sbjct: 86 catgtgttctcaggtcgcccc 106
>39882_aly-MIR398b:mirbase
Length = 142
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 65 acatgtgttctcaggtcgcccctgc 89
||||||||||||||||| |||||||
Sbjct: 88 acatgtgttctcaggtcacccctgc 112
>40091_ath-MIR398c:mirbase
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 catgtgttctcaggtcgcccctgc 89
|||||||||||||||| |||||||
Sbjct: 83 catgtgttctcaggtcacccctgc 106
>40090_ath-MIR398b:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 catgtgttctcaggtcgcccctgc 89
|||||||||||||||| |||||||
Sbjct: 84 catgtgttctcaggtcacccctgc 107
