miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32069_mmu-mir-429:mirbase
Length = 83
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 tgctgatggatgtcttaccagacatggttagatctggatgcatctgtctaatactgtctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 tgctgatggatgtcttaccagacatggttagatctggatgcatctgtctaatactgtctg 62
Query: 61 gtaatgccgtccatccac 78
||||||||||||||||||
Sbjct: 63 gtaatgccgtccatccac 80
>32910_rno-mir-429:mirbase
Length = 85
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 1 tgctgatggatgtcttaccagacatggttagatctggatgcatctgtctaatactgtctg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 tgctgatggatgtcttaccagacatggttagatctggatgtatctgtctaatactgtctg 64
Query: 61 gtaatgccgtccatcca 77
|||||||||||||||||
Sbjct: 65 gtaatgccgtccatcca 81
>25673_xla-mir-429:mirbase
Length = 68
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 7 tggatgtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggatgtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatg 60
Query: 67 ccgtccat 74
||||||||
Sbjct: 61 ccgtccat 68
>33372_bta-mir-429:mirbase
Length = 84
Score = 89.7 bits (45), Expect = 3e-19
Identities = 61/65 (93%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 12 gtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgccgtc 71
||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||
Sbjct: 16 gtcttaccagacacggttagatctgg-tccttctgtctaatactgtctggtaatgccgtc 74
Query: 72 catcc 76
|||||
Sbjct: 75 catcc 79
>27176_eca-mir-429:mirbase
Length = 67
Score = 85.7 bits (43), Expect = 4e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 12 gtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgccgtc 71
||||||||||||| ||||||||||| | | |||||||||||||||||||||||||||||
Sbjct: 5 gtcttaccagacacggttagatctgcgtccttctgtctaatactgtctggtaatgccgtc 64
Query: 72 cat 74
|||
Sbjct: 65 cat 67
>34094_ssc-mir-429:mirbase
Length = 81
Score = 83.8 bits (42), Expect = 2e-17
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 5 gatggatgtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaa 64
||||| ||||||||||| || |||||||||||| | | ||||||||||||||||||||||
Sbjct: 7 gatgggtgtcttaccaggcacggttagatctggtt-cttctgtctaatactgtctggtaa 65
Query: 65 tgccgtccat 74
||||||||||
Sbjct: 66 tgccgtccat 75
>26843_cfa-mir-429:mirbase
Length = 85
Score = 81.8 bits (41), Expect = 6e-17
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 1 tgctgatggatgtcttaccagacatggttagatctggatgcatctgtctaatactgtctg 60
||||||||| ||||||||||||| |||||||||||| | | ||||||||||||||||
Sbjct: 5 tgctgatgggcgtcttaccagacacggttagatctgggttctggtgtctaatactgtctg 64
Query: 61 gtaatgccgtccatcca 77
|||||||||| ||||||
Sbjct: 65 gtaatgccgttcatcca 81
>34400_dre-mir-429:mirbase
Length = 82
Score = 71.9 bits (36), Expect = 6e-14
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 4 tgatggatgtcttaccagacatggttagatctggatgcatctgtctaatactgtctggta 63
||||||| |||||||||||||||||||||| | | | |||||||||||||||||||
Sbjct: 6 tgatggacgtcttaccagacatggttagatgtaataacttgtgtctaatactgtctggta 65
Query: 64 atgccgtccatc 75
||||||||||||
Sbjct: 66 atgccgtccatc 77
>28649_hsa-mir-429:mirbase
Length = 83
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 12 gtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgccgtc 71
||||||||||||||||||||| |||| | |||||||||||||||||||||| |||||
Sbjct: 16 gtcttaccagacatggttagacctggc--cctctgtctaatactgtctggtaaaaccgtc 73
Query: 72 catcc 76
|||||
Sbjct: 74 catcc 78
>31003_ppy-mir-429:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 12 gtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgccgtc 71
||||||||||||||||||||| |||| | |||||||||||||||||||||| |||||
Sbjct: 16 gtcttaccagacatggttagacctggccg--tctgtctaatactgtctggtaaaaccgtc 73
Query: 72 catcc 76
|||||
Sbjct: 74 catcc 78
>26026_gga-mir-429:mirbase
Length = 84
Score = 61.9 bits (31), Expect = 6e-11
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 1 tgctgatggatgtcttaccagacatggttagatctggatgcatctgtctaatactgtctg 60
||||||| | ||||||||||| || ||||||||| | | ||||||||||||||||||
Sbjct: 4 tgctgattgctgtcttaccaggcaaagttagatctagctatttctgtctaatactgtctg 63
Query: 61 gtaatgccgtc 71
|||||||||||
Sbjct: 64 gtaatgccgtc 74
>25860_xtr-mir-429:mirbase
Length = 87
Score = 60.0 bits (30), Expect = 2e-10
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 10 atgtcttaccagacatggttagatctggatgcatct-gtctaatactgtctggtaatgcc 68
||||||||||||||| |||||||||| | | | ||| |||||||||||||||||||||||
Sbjct: 14 atgtcttaccagacaaggttagatctagttac-tctcgtctaatactgtctggtaatgcc 72
Query: 69 gt 70
||
Sbjct: 73 gt 74
>27450_mdo-mir-429:mirbase
Length = 72
Score = 60.0 bits (30), Expect = 2e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 11 tgtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgcc 68
|||||||||||||| ||||||||| | | ||||||||||||||||||||||||||
Sbjct: 7 tgtcttaccagacaaagttagatctcgctatttctgtctaatactgtctggtaatgcc 64
>27902_mml-mir-429:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 12 gtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgccgtc 71
||||||||||||| ||||||| |||| | |||||||||||||||||||||| |||||
Sbjct: 16 gtcttaccagacacggttagacctggctc--tctgtctaatactgtctggtaaaaccgtc 73
Query: 72 catcc 76
|||||
Sbjct: 74 catcc 78
>34652_fru-mir-429:mirbase
Length = 76
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 45 tgtctaatactgtctggtaatgccgtccat 74
||||||||||||||||||||||||||||||
Sbjct: 47 tgtctaatactgtctggtaatgccgtccat 76
>34800_tni-mir-429:mirbase
Length = 87
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 45 tgtctaatactgtctggtaatgccgtccat 74
||||||||||||||||||||||||||||||
Sbjct: 49 tgtctaatactgtctggtaatgccgtccat 78
>31552_oan-mir-429:mirbase
Length = 112
Score = 54.0 bits (27), Expect = 1e-08
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 1 tgctgatggatgtcttaccagacatggttagatctggatgcatctgtctaatactgtctg 60
||||||| | |||||||||||||| |||||||||| | | |||||||||||||||
Sbjct: 16 tgctgattggtgtcttaccagacaaagttagatctgactattttcgtctaatactgtctg 75
Query: 61 gtaatgccgtc 71
|||||||||||
Sbjct: 76 gtaatgccgtc 86
>34401_dre-mir-429b:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 tgtctaatactgtctggtaatgcc 68
|||||||||||| |||||||||||
Sbjct: 63 tgtctaatactgcctggtaatgcc 86
>34889_sko-mir-200:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tctaatactgtctggtaatg 66
||||||||||||||||||||
Sbjct: 59 tctaatactgtctggtaatg 78
>24693_bfl-mir-200b:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 48 ctaatactgtctggtaatg 66
|||||||||||||||||||
Sbjct: 58 ctaatactgtctggtaatg 76
