miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53904_ptc-miRf12082-akr:pmrd
Length = 105
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 ccaacttcttctgaactctctccctcaaccgctactctagagcttggcaatccttgtcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaacttcttctgaactctctccctcaaccgctactctagagcttggcaatccttgtcga 60
Query: 61 ttgtttctgtgtagcggttgaggtgaggggttcagaacatgttgg 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgtttctgtgtagcggttgaggtgaggggttcagaacatgttgg 105
>53903_ptc-miRf12081-akr:pmrd
Length = 103
Score = 147 bits (74), Expect = 2e-36
Identities = 98/105 (93%), Gaps = 2/105 (1%)
Strand = Plus / Plus
Query: 1 ccaacttcttctgaactctctccctcaaccgctactctagagcttggcaatccttgtcga 60
|||| ||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |
Sbjct: 1 ccaatttcttctgaactctctccctcaaccgccactctagaggttggca--ccttgtcaa 58
Query: 61 ttgtttctgtgtagcggttgaggtgaggggttcagaacatgttgg 105
|||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 59 ttgtttctgtgtagcggtcgaggtgaggggttcagaacatgttgg 103
>51814_ptc-miR1446b:pmrd
Length = 103
Score = 147 bits (74), Expect = 2e-36
Identities = 98/105 (93%), Gaps = 2/105 (1%)
Strand = Plus / Plus
Query: 1 ccaacttcttctgaactctctccctcaaccgctactctagagcttggcaatccttgtcga 60
|||| ||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |
Sbjct: 1 ccaatttcttctgaactctctccctcaaccgccactctagaggttggca--ccttgtcaa 58
Query: 61 ttgtttctgtgtagcggttgaggtgaggggttcagaacatgttgg 105
|||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 59 ttgtttctgtgtagcggtcgaggtgaggggttcagaacatgttgg 103
>53114_ptc-miRf11292-akr:pmrd
Length = 113
Score = 121 bits (61), Expect = 1e-28
Identities = 94/105 (89%)
Strand = Plus / Minus
Query: 1 ccaacttcttctgaactctctccctcaaccgctactctagagcttggcaatccttgtcga 60
||||||||||||||||||||||||||||| ||||||||||| |||| |||||| |||| |
Sbjct: 109 ccaacttcttctgaactctctccctcaactgctactctagatcttgccaatccctgtcaa 50
Query: 61 ttgtttctgtgtagcggttgaggtgaggggttcagaacatgttgg 105
|||||||||||||| || |||||||| ||||||| | |||||||
Sbjct: 49 gtgtttctgtgtagcagtcgaggtgagaggttcaggaaatgttgg 5
>51816_ptc-miR1446d:pmrd
Length = 105
Score = 121 bits (61), Expect = 1e-28
Identities = 94/105 (89%)
Strand = Plus / Plus
Query: 1 ccaacttcttctgaactctctccctcaaccgctactctagagcttggcaatccttgtcga 60
||||||||||||||||||||||||||||| ||||||||||| |||| |||||| |||| |
Sbjct: 1 ccaacttcttctgaactctctccctcaactgctactctagatcttgccaatccctgtcaa 60
Query: 61 ttgtttctgtgtagcggttgaggtgaggggttcagaacatgttgg 105
|||||||||||||| || |||||||| ||||||| | |||||||
Sbjct: 61 gtgtttctgtgtagcagtcgaggtgagaggttcaggaaatgttgg 105
>51817_ptc-miR1446e:pmrd
Length = 107
Score = 83.8 bits (42), Expect = 2e-17
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 1 ccaacttcttctgaactctctccctcaaccgctactctagagcttggcaatccttgtcga 60
||||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||| |
Sbjct: 1 ccaactttttctgaactctctccctcaactgctattctagagcttgttaatccttgtcaa 60
Query: 61 ttgtttctgtgtagcggttgaggtgagggg 90
|||||| |||||| || |||| ||||||
Sbjct: 61 gtgtttccctgtagcagtcgaggcgagggg 90
>53116_ptc-miRf11294-akr:pmrd
Length = 101
Score = 77.8 bits (39), Expect = 1e-15
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 4 acttcttctgaactctctccctcaaccgctactctagagcttggcaatccttgtcgattg 63
|||| ||||||||||||||||||||| |||| ||||||||||| |||||||||| | ||
Sbjct: 1 actttttctgaactctctccctcaactgctattctagagcttgttaatccttgtcaagtg 60
Query: 64 tttctgtgtagcggttgaggtgagggg 90
|||| |||||| || |||| ||||||
Sbjct: 61 tttccctgtagcagtcgaggcgagggg 87
>51815_ptc-miR1446c:pmrd
Length = 105
Score = 65.9 bits (33), Expect = 5e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 1 ccaacttcttctgaactctctccctcaaccgctactctagagctt 45
||||||| ||||||||||||||||||||| |||| ||||||||||
Sbjct: 1 ccaactttttctgaactctctccctcaactgctattctagagctt 45
