miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41518_ptc-MIR1446c:mirbase
Length = 105
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 ccaactttttctgaactctctccctcaactgctattctagagcttcctgagctaaccctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaactttttctgaactctctccctcaactgctattctagagcttcctgagctaaccctt 60
Query: 61 gtgtttctgtgtagcagtcaaggtgggaggctcagaaaatgttgg 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtttctgtgtagcagtcaaggtgggaggctcagaaaatgttgg 105
>41520_ptc-MIR1446e:mirbase
Length = 107
Score = 89.7 bits (45), Expect = 4e-19
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 1 ccaactttttctgaactctctccctcaactgctattctagagctt 45
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaactttttctgaactctctccctcaactgctattctagagctt 45
>41519_ptc-MIR1446d:mirbase
Length = 105
Score = 65.9 bits (33), Expect = 5e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 1 ccaactttttctgaactctctccctcaactgctattctaga 41
||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 1 ccaacttcttctgaactctctccctcaactgctactctaga 41
>41516_ptc-MIR1446a:mirbase
Length = 105
Score = 65.9 bits (33), Expect = 5e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 1 ccaactttttctgaactctctccctcaactgctattctagagctt 45
||||||| ||||||||||||||||||||| |||| ||||||||||
Sbjct: 1 ccaacttcttctgaactctctccctcaaccgctactctagagctt 45
>41517_ptc-MIR1446b:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 9 ttctgaactctctccctcaactgctattctagag 42
||||||||||||||||||||| || | |||||||
Sbjct: 9 ttctgaactctctccctcaaccgccactctagag 42
Score = 40.1 bits (20), Expect = 3e-04
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 62 tgtttctgtgtagcagtcaaggtgggaggctcagaaaatgttgg 105
|||||||||||||| ||| ||||| | || |||||| |||||||
Sbjct: 60 tgtttctgtgtagcggtcgaggtgaggggttcagaacatgttgg 103
