miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00954;MIR1446;AARH01005504.1/162893-162997 3694:Populus
trichocarpa
Length = 105
Score = 208 bits (105), Expect = 1e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 ccaactttttctgaactctctccctcaactgctattctagagcttcctgagctaaccctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaactttttctgaactctctccctcaactgctattctagagcttcctgagctaaccctt 60
Query: 61 gtgtttctgtgtagcagtcaaggtgggaggctcagaaaatgttgg 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtttctgtgtagcagtcaaggtgggaggctcagaaaatgttgg 105
>RF00954;MIR1446;AC214592.1/26270-26164 3694:Populus trichocarpa
Length = 107
Score = 89.7 bits (45), Expect = 7e-18
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 1 ccaactttttctgaactctctccctcaactgctattctagagctt 45
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaactttttctgaactctctccctcaactgctattctagagctt 45
>RF00954;MIR1446;AARH01005504.1/53010-52906 3694:Populus
trichocarpa
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 1 ccaactttttctgaactctctccctcaactgctattctagagctt 45
||||||| ||||||||||||||||||||| |||| ||||||||||
Sbjct: 1 ccaacttcttctgaactctctccctcaaccgctactctagagctt 45
>RF00954;MIR1446;AARH01006471.1/315430-315326 3694:Populus
trichocarpa
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 1 ccaactttttctgaactctctccctcaactgctattctaga 41
||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 1 ccaacttcttctgaactctctccctcaactgctactctaga 41
>RF00954;MIR1446;EU124734.1/86156-86062 4081:Solanum lycopersicum
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 ttttctgaactctctccctcaa 28
||||||||||||||||||||||
Sbjct: 7 ttttctgaactctctccctcaa 28
>RF00954;MIR1446;EU124734.1/81383-81275 4081:Solanum lycopersicum
Length = 109
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 ttttctgaactctctccctcaa 28
||||||||||||||||||||||
Sbjct: 7 ttttctgaactctctccctcaa 28
