miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53114_ptc-miRf11292-akr:pmrd
Length = 113
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 1 ccaacttcttctgaactctctccctcaactgctactctagatcttgccaatccctgtcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ccaacttcttctgaactctctccctcaactgctactctagatcttgccaatccctgtcaa 50
Query: 61 gtgtttctgtgtagcagtcgaggtgagaggttcaggaaatgttgg 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 gtgtttctgtgtagcagtcgaggtgagaggttcaggaaatgttgg 5
>53904_ptc-miRf12082-akr:pmrd
Length = 105
Score = 121 bits (61), Expect = 1e-28
Identities = 94/105 (89%)
Strand = Plus / Plus
Query: 1 ccaacttcttctgaactctctccctcaactgctactctagatcttgccaatccctgtcaa 60
||||||||||||||||||||||||||||| ||||||||||| |||| |||||| |||| |
Sbjct: 1 ccaacttcttctgaactctctccctcaaccgctactctagagcttggcaatccttgtcga 60
Query: 61 gtgtttctgtgtagcagtcgaggtgagaggttcaggaaatgttgg 105
|||||||||||||| || |||||||| ||||||| | |||||||
Sbjct: 61 ttgtttctgtgtagcggttgaggtgaggggttcagaacatgttgg 105
>51813_ptc-miR1446a:pmrd
Length = 105
Score = 121 bits (61), Expect = 1e-28
Identities = 94/105 (89%)
Strand = Plus / Plus
Query: 1 ccaacttcttctgaactctctccctcaactgctactctagatcttgccaatccctgtcaa 60
||||||||||||||||||||||||||||| ||||||||||| |||| |||||| |||| |
Sbjct: 1 ccaacttcttctgaactctctccctcaaccgctactctagagcttggcaatccttgtcga 60
Query: 61 gtgtttctgtgtagcagtcgaggtgagaggttcaggaaatgttgg 105
|||||||||||||| || |||||||| ||||||| | |||||||
Sbjct: 61 ttgtttctgtgtagcggttgaggtgaggggttcagaacatgttgg 105
>51817_ptc-miR1446e:pmrd
Length = 107
Score = 101 bits (51), Expect = 1e-22
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 1 ccaacttcttctgaactctctccctcaactgctactctagatcttgccaatccctgtcaa 60
||||||| |||||||||||||||||||||||||| |||||| |||| ||||| ||||||
Sbjct: 1 ccaactttttctgaactctctccctcaactgctattctagagcttgttaatccttgtcaa 60
Query: 61 gtgtttctgtgtagcagtcgagg 83
||||||| ||||||||||||||
Sbjct: 61 gtgtttccctgtagcagtcgagg 83
>53116_ptc-miRf11294-akr:pmrd
Length = 101
Score = 95.6 bits (48), Expect = 6e-21
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 4 acttcttctgaactctctccctcaactgctactctagatcttgccaatccctgtcaagtg 63
|||| |||||||||||||||||||||||||| |||||| |||| ||||| |||||||||
Sbjct: 1 actttttctgaactctctccctcaactgctattctagagcttgttaatccttgtcaagtg 60
Query: 64 tttctgtgtagcagtcgagg 83
|||| ||||||||||||||
Sbjct: 61 tttccctgtagcagtcgagg 80
>53903_ptc-miRf12081-akr:pmrd
Length = 103
Score = 91.7 bits (46), Expect = 1e-19
Identities = 91/105 (86%), Gaps = 2/105 (1%)
Strand = Plus / Plus
Query: 1 ccaacttcttctgaactctctccctcaactgctactctagatcttgccaatccctgtcaa 60
|||| |||||||||||||||||||||||| || |||||||| ||| || || ||||||
Sbjct: 1 ccaatttcttctgaactctctccctcaaccgccactctagaggttggca--ccttgtcaa 58
Query: 61 gtgtttctgtgtagcagtcgaggtgagaggttcaggaaatgttgg 105
|||||||||||||| ||||||||||| ||||||| | |||||||
Sbjct: 59 ttgtttctgtgtagcggtcgaggtgaggggttcagaacatgttgg 103
>51814_ptc-miR1446b:pmrd
Length = 103
Score = 91.7 bits (46), Expect = 1e-19
Identities = 91/105 (86%), Gaps = 2/105 (1%)
Strand = Plus / Plus
Query: 1 ccaacttcttctgaactctctccctcaactgctactctagatcttgccaatccctgtcaa 60
|||| |||||||||||||||||||||||| || |||||||| ||| || || ||||||
Sbjct: 1 ccaatttcttctgaactctctccctcaaccgccactctagaggttggca--ccttgtcaa 58
Query: 61 gtgtttctgtgtagcagtcgaggtgagaggttcaggaaatgttgg 105
|||||||||||||| ||||||||||| ||||||| | |||||||
Sbjct: 59 ttgtttctgtgtagcggtcgaggtgaggggttcagaacatgttgg 103
>51815_ptc-miR1446c:pmrd
Length = 105
Score = 65.9 bits (33), Expect = 5e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 1 ccaacttcttctgaactctctccctcaactgctactctaga 41
||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 1 ccaactttttctgaactctctccctcaactgctattctaga 41
