miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00954;MIR1446;AARH01006471.1/315430-315326 3694:Populus
trichocarpa
Length = 105
Score = 208 bits (105), Expect = 1e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 ccaacttcttctgaactctctccctcaactgctactctagatcttgccaatccctgtcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaacttcttctgaactctctccctcaactgctactctagatcttgccaatccctgtcaa 60
Query: 61 gtgtttctgtgtagcagtcgaggtgagaggttcaggaaatgttgg 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtttctgtgtagcagtcgaggtgagaggttcaggaaatgttgg 105
>RF00954;MIR1446;AARH01005504.1/53010-52906 3694:Populus trichocarpa
Length = 105
Score = 121 bits (61), Expect = 2e-27
Identities = 94/105 (89%)
Strand = Plus / Plus
Query: 1 ccaacttcttctgaactctctccctcaactgctactctagatcttgccaatccctgtcaa 60
||||||||||||||||||||||||||||| ||||||||||| |||| |||||| |||| |
Sbjct: 1 ccaacttcttctgaactctctccctcaaccgctactctagagcttggcaatccttgtcga 60
Query: 61 gtgtttctgtgtagcagtcgaggtgagaggttcaggaaatgttgg 105
|||||||||||||| || |||||||| ||||||| | |||||||
Sbjct: 61 ttgtttctgtgtagcggttgaggtgaggggttcagaacatgttgg 105
>RF00954;MIR1446;AC214592.1/26270-26164 3694:Populus trichocarpa
Length = 107
Score = 101 bits (51), Expect = 2e-21
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 1 ccaacttcttctgaactctctccctcaactgctactctagatcttgccaatccctgtcaa 60
||||||| |||||||||||||||||||||||||| |||||| |||| ||||| ||||||
Sbjct: 1 ccaactttttctgaactctctccctcaactgctattctagagcttgttaatccttgtcaa 60
Query: 61 gtgtttctgtgtagcagtcgagg 83
||||||| ||||||||||||||
Sbjct: 61 gtgtttccctgtagcagtcgagg 83
>RF00954;MIR1446;AARH01005504.1/162893-162997 3694:Populus
trichocarpa
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 1 ccaacttcttctgaactctctccctcaactgctactctaga 41
||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 1 ccaactttttctgaactctctccctcaactgctattctaga 41
