miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00954;MIR1446;AC214592.1/26270-26164 3694:Populus trichocarpa
Length = 107
Score = 212 bits (107), Expect = 7e-55
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 ccaactttttctgaactctctccctcaactgctattctagagcttgttaatccttgtcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaactttttctgaactctctccctcaactgctattctagagcttgttaatccttgtcaa 60
Query: 61 gtgtttccctgtagcagtcgaggcgagggggtttcggaaaatgttgg 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtttccctgtagcagtcgaggcgagggggtttcggaaaatgttgg 107
>RF00954;MIR1446;AARH01006471.1/315430-315326 3694:Populus
trichocarpa
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 1 ccaactttttctgaactctctccctcaactgctattctagagcttgttaatccttgtcaa 60
||||||| |||||||||||||||||||||||||| |||||| |||| ||||| ||||||
Sbjct: 1 ccaacttcttctgaactctctccctcaactgctactctagatcttgccaatccctgtcaa 60
Query: 61 gtgtttccctgtagcagtcgagg 83
||||||| ||||||||||||||
Sbjct: 61 gtgtttctgtgtagcagtcgagg 83
>RF00954;MIR1446;AARH01005504.1/162893-162997 3694:Populus
trichocarpa
Length = 105
Score = 89.7 bits (45), Expect = 7e-18
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 1 ccaactttttctgaactctctccctcaactgctattctagagctt 45
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaactttttctgaactctctccctcaactgctattctagagctt 45
>RF00954;MIR1446;AARH01005504.1/53010-52906 3694:Populus
trichocarpa
Length = 105
Score = 83.8 bits (42), Expect = 4e-16
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 1 ccaactttttctgaactctctccctcaactgctattctagagcttgttaatccttgtcaa 60
||||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||| |
Sbjct: 1 ccaacttcttctgaactctctccctcaaccgctactctagagcttggcaatccttgtcga 60
Query: 61 gtgtttccctgtagcagtcgaggcgagggg 90
|||||| |||||| || |||| ||||||
Sbjct: 61 ttgtttctgtgtagcggttgaggtgagggg 90
>RF00954;MIR1446;EU124734.1/86156-86062 4081:Solanum lycopersicum
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 ttttctgaactctctccctcaa 28
||||||||||||||||||||||
Sbjct: 7 ttttctgaactctctccctcaa 28
>RF00954;MIR1446;EU124734.1/81383-81275 4081:Solanum lycopersicum
Length = 109
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 ttttctgaactctctccctcaa 28
||||||||||||||||||||||
Sbjct: 7 ttttctgaactctctccctcaa 28
