miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52625_ptc-miRf10803-akr:pmrd
Length = 108
Score = 125 bits (63), Expect = 6e-30
Identities = 88/95 (92%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 3 gaaaaaaccgagccaaaccggtttgaacctgttttg-tcctaaaaaaccgaaccgaactg 61
|||||||||||||||||||||||||||| ||||| |||||||||||||||||| || |
Sbjct: 7 gaaaaaaccgagccaaaccggtttgaactggtttttatcctaaaaaaccgaaccggaccg 66
Query: 62 aaaccggttggtttgaaccggtttcggttcggttt 96
|||||||| ||||||||||||||||||||||||||
Sbjct: 67 aaaccggtcggtttgaaccggtttcggttcggttt 101
>52274_ptc-miRf10452-akr:pmrd
Length = 147
Score = 99.6 bits (50), Expect = 4e-22
Identities = 87/98 (88%), Gaps = 6/98 (6%)
Strand = Plus / Plus
Query: 3 gaaaaaaccgagccaaaccggtttgaacctgtttt-gtcctaaaaaaccgaaccgaactg 61
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 48 gaaaaaaccgagccaaacaggtttgaacctgtttttgtcctaaaaaaccgaaccgaa--- 104
Query: 62 aaaccggttggtttgaaccggtttcggttcggtttcag 99
||| | ||||||||||||||| |||||||||||||
Sbjct: 105 --accagccggtttgaaccggttttggttcggtttcag 140
>51868_ptc-miRf10046-akr:pmrd
Length = 97
Score = 89.7 bits (45), Expect = 4e-19
Identities = 79/89 (88%), Gaps = 6/89 (6%)
Strand = Plus / Plus
Query: 3 gaaaaaaccgagccaaaccggtttgaacctg-ttttgtcctaaaaaaccgaaccgaactg 61
||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||
Sbjct: 13 gaaaaaaccgagccaaacctgtttgaaccggtttttgtcctaaaaaaccgaaccgaac-- 70
Query: 62 aaaccggttggtttgaaccggtttcggtt 90
|||| ||||||||||||||||||||
Sbjct: 71 ---ccggccggtttgaaccggtttcggtt 96
>53823_ptc-miRf12001-akr:pmrd
Length = 124
Score = 83.8 bits (42), Expect = 2e-17
Identities = 85/98 (86%), Gaps = 6/98 (6%)
Strand = Plus / Minus
Query: 6 aaaaccgagccaaaccggtttgaacctgtttt-gtcctaaaaaaccgaaccgaactg--- 61
|||||||||||||||||||||||| | ||||| | |||||||||||||| |||||||
Sbjct: 104 aaaaccgagccaaaccggtttgaatcggtttttgccctaaaaaaccgaatcgaactgcac 45
Query: 62 --aaaccggttggtttgaaccggtttcggttcggtttc 97
||||| || ||||||| |||||||||||||||||||
Sbjct: 44 cgaaaccagtcggtttgacccggtttcggttcggtttc 7
>53731_ptc-miRf11909-akr:pmrd
Length = 74
Score = 77.8 bits (39), Expect = 1e-15
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 47 aaccgaaccgaactgaaaccggttggtttgaaccggtttcggttcggtttc 97
||||||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct: 11 aaccgaaccgaaccgaaactggtcggtttgaaccggtttcggttcggtttc 61
>53395_ptc-miRf11573-akr:pmrd
Length = 74
Score = 77.8 bits (39), Expect = 1e-15
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 47 aaccgaaccgaactgaaaccggttggtttgaaccggtttcggttcggtttc 97
||||||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct: 11 aaccgaaccgaaccgaaactggtcggtttgaaccggtttcggttcggtttc 61
>53838_ptc-miRf12016-akr:pmrd
Length = 127
Score = 75.8 bits (38), Expect = 5e-15
Identities = 80/94 (85%), Gaps = 5/94 (5%)
Strand = Plus / Minus
Query: 4 aaaaaaccgagccaaaccggtttgaacctgttttgtcctaaaaaaccgaaccgaactgaa 63
|||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| |||
Sbjct: 92 aaaaaaacgagccaaaccagtttgaactggttttttcctaaaaaactgaacc-----gaa 38
Query: 64 accggttggtttgaaccggtttcggttcggtttc 97
|| || |||||||||||||||||||||||||||
Sbjct: 37 actagtcggtttgaaccggtttcggttcggtttc 4
>53948_ptc-miRf12126-akr:pmrd
Length = 158
Score = 73.8 bits (37), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 4 aaaaaaccgagccaaaccggtttgaacctg-ttttgtcctaaaaaaccgaaccgaactga 62
|||||||||||||||||||||||||||| | ||||||| |||||||| ||||||| ||
Sbjct: 86 aaaaaaccgagccaaaccggtttgaaccggtttttgtcttaaaaaactaaaccgaatcga 145
Query: 63 aaccggttggttt 75
||||||| |||||
Sbjct: 146 aaccggtcggttt 158
>52446_ptc-miRf10624-akr:pmrd
Length = 158
Score = 73.8 bits (37), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 4 aaaaaaccgagccaaaccggtttgaacctg-ttttgtcctaaaaaaccgaaccgaactga 62
|||||||||||||||||||||||||||| | ||||||| |||||||| ||||||| ||
Sbjct: 86 aaaaaaccgagccaaaccggtttgaaccggtttttgtcttaaaaaactaaaccgaatcga 145
Query: 63 aaccggttggttt 75
||||||| |||||
Sbjct: 146 aaccggtcggttt 158
>53947_ptc-miRf12125-akr:pmrd
Length = 75
Score = 71.9 bits (36), Expect = 8e-14
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 50 cgaaccgaactgaaaccggttggtttgaaccggtttcggttcggtttc 97
|||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct: 14 cgaaccgaaccgaaaccagtcggtttgaaccggtttcggttcggtttc 61
>52886_ptc-miRf11064-akr:pmrd
Length = 144
Score = 71.9 bits (36), Expect = 8e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 7 aaaccgagccaaaccggtttgaacctgtttt-gtcctaaaaaaccgaaccgaactgaaac 65
||||| ||||||||| | ||||||| ||||| |||||||||||||||||||||| |||||
Sbjct: 75 aaaccaagccaaaccagcttgaaccggtttttgtcctaaaaaaccgaaccgaacagaaac 16
Query: 66 cggt 69
||||
Sbjct: 15 cggt 12
>52930_ptc-miRf11108-akr:pmrd
Length = 79
Score = 69.9 bits (35), Expect = 3e-13
Identities = 48/51 (94%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 47 aaccgaaccgaactgaaaccggttggtttgaaccggtttcggttcggtttc 97
||||||||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct: 22 aaccgaaccgaaccgaaactg-ttggtttgaaccggtttcggttcggtttc 71
>54220_ptc-miRf12398-akr:pmrd
Length = 69
Score = 61.9 bits (31), Expect = 8e-11
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 47 aaccgaaccgaactgaaaccggttggtttgaaccggtttcggttcgg 93
||||||||||||| ||||| ||| ||||||| |||||||||||||||
Sbjct: 8 aaccgaaccgaaccgaaactggtcggtttgacccggtttcggttcgg 54
>53431_ptc-miRf11609-akr:pmrd
Length = 60
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 3 gaaaaaaccgagccaaaccggtttgaacctgtttt 37
||||||||||||||||||||||||||||| |||||
Sbjct: 39 gaaaaaaccgagccaaaccggtttgaaccggtttt 5
>52373_ptc-miRf10551-akr:pmrd
Length = 108
Score = 61.9 bits (31), Expect = 8e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 8 aaccgagccaaaccggtttgaacctg-ttttgtcctaaaaaaccgaaccgaactgaaacc 66
|||||||||||||||||||||||| | |||| |||||||||| ||||||||| |||||
Sbjct: 108 aaccgagccaaaccggtttgaaccggtttttaccctaaaaaacagaaccgaaccaaaacc 49
Query: 67 ggt 69
|||
Sbjct: 48 ggt 46
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 6 aaaaccgagccaaaccggtttga 28
|||||||||||||||||||||||
Sbjct: 30 aaaaccgagccaaaccggtttga 8
>51988_ptc-miRf10166-akr:pmrd
Length = 154
Score = 60.0 bits (30), Expect = 3e-10
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 3 gaaaaaaccgagccaaaccggtttgaacctgttt-tgtcctaaaaaaccgaaccgaactg 61
||||||||| || |||||||||||||||| |||| || |||||||||| |||||||| |
Sbjct: 81 gaaaaaaccaagtcaaaccggtttgaaccggtttctgctctaaaaaaccaaaccgaaccg 140
Query: 62 aaaccggttggttt 75
|||| ||| |||||
Sbjct: 141 aaactggtcggttt 154
>52857_ptc-miRf11035-akr:pmrd
Length = 66
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 5 aaaaaccgagccaaaccggtttgaacctgtttt 37
||||||||||||||||||||||||||| |||||
Sbjct: 41 aaaaaccgagccaaaccggtttgaaccggtttt 9
>53654_ptc-miRf11832-akr:pmrd
Length = 123
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 66 cggttggtttgaaccggtttcggttcggtttc 97
|||| |||||||||||||||||||||||||||
Sbjct: 33 cggtcggtttgaaccggtttcggttcggtttc 2
Score = 56.0 bits (28), Expect = 5e-09
Identities = 41/44 (93%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 7 aaaccgagccaaaccggtttgaacctg-ttttgtcctaaaaaac 49
||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct: 81 aaaccgagccaaaccagtttgaaccggtttttgtcctaaaaaac 38
>52338_ptc-miRf10516-akr:pmrd
Length = 136
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 52 aaccgaactgaaaccggttggtttgaaccggtttcg 87
|||||||| ||||||||| |||||||||||||||||
Sbjct: 93 aaccgaaccgaaaccggtcggtttgaaccggtttcg 128
>51851_ptc-miRf10029-akr:pmrd
Length = 79
Score = 56.0 bits (28), Expect = 5e-09
Identities = 41/44 (93%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 7 aaaccgagccaaaccggtttgaacctg-ttttgtcctaaaaaac 49
||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct: 1 aaaccgagccaaaccagtttgaaccggtttttgtcctaaaaaac 44
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 66 cggttggtttgaaccggtttcggttcggttt 96
|||| ||||||||||||||||||||||||||
Sbjct: 49 cggtcggtttgaaccggtttcggttcggttt 79
>53928_ptc-miRf12106-akr:pmrd
Length = 137
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 4 aaaaaaccgagccaaaccggtttgaacctgtttt 37
||||||||||| |||||||||||||||| |||||
Sbjct: 72 aaaaaaccgagtcaaaccggtttgaaccggtttt 39
>53113_ptc-miRf11291-akr:pmrd
Length = 77
Score = 52.0 bits (26), Expect = 8e-08
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 6 aaaaccgagccaaaccggtttgaacctgttttg-tcctaaaaaaccgaaccgaa 58
|||||| || ||||||| | |||||| |||||| ||||||||||||||||||||
Sbjct: 77 aaaaccaagtcaaaccgatctgaaccggttttggtcctaaaaaaccgaaccgaa 24
>54327_ptc-miRf12505-akr:pmrd
Length = 143
Score = 48.1 bits (24), Expect = 1e-06
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 17 aaaccggtttgaacctgtttt-gtcctaaaaaaccgaaccgaac 59
||||||||||||||| ||||| ||||||||||||| || |||||
Sbjct: 8 aaaccggtttgaaccggtttttgtcctaaaaaaccaaatcgaac 51
>52512_ptc-miRf10690-akr:pmrd
Length = 120
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 47 aaccgaaccgaactgaaaccggttggtttgaaccg 81
||||||||||||| ||||||| | |||||||||||
Sbjct: 22 aaccgaaccgaaccgaaaccgatcggtttgaaccg 56
>53625_ptc-miRf11803-akr:pmrd
Length = 152
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 3 gaaaaaaccgagccaaaccgg 23
|||||||||||||||||||||
Sbjct: 64 gaaaaaaccgagccaaaccgg 44
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 3 gaaaaaaccgagccaaaccg 22
||||||||||||||||||||
Sbjct: 44 gaaaaaaccgagccaaaccg 25
