miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53012_ptc-miRf11190-akr:pmrd
Length = 123
Score = 75.8 bits (38), Expect = 5e-15
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 1 ggcagtccaaacaccacgtggcgcttgggctgcacccaagaggaagcaga 50
||||| ||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 123 ggcagcccaaacaccacgtggcgcttgggctacacccaaaaggaagcaga 74
>54243_ptc-miRf12421-akr:pmrd
Length = 127
Score = 69.9 bits (35), Expect = 3e-13
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 12 caccacgtggcgcttgggctgcacccaagaggaagcaga 50
|||||||||||||||||||| ||||||||||||||||||
Sbjct: 114 caccacgtggcgcttgggctacacccaagaggaagcaga 76
>53655_ptc-miRf11833-akr:pmrd
Length = 125
Score = 60.0 bits (30), Expect = 3e-10
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 2 gcagtccaaacaccacgtggcgcttgggctgcacccaagaggaagcagatgaagagcc 59
|||| |||| ||| || |||| ||||||||||||||||||||||||||| |||||||
Sbjct: 123 gcagcccaagcactacatggcacttgggctgcacccaagaggaagcagaccaagagcc 66
>52821_ptc-miRf10999-akr:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 14 ccacgtggcgcttgggctgcacccaagaggaagcag 49
|||| ||| |||||| ||||| ||||||||||||||
Sbjct: 18 ccacctggtgcttggactgcagccaagaggaagcag 53
