miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53762_ptc-miRf11940-akr:pmrd
Length = 121
Score = 69.9 bits (35), Expect = 4e-13
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 36 accggtccgggtctaagcaaaaactcgcctggaagttggtccggtgaaacccagtcgacc 95
||||||||||||||||| |||||| ||| ||||||||| |||| ||||||| |||||||
Sbjct: 77 accggtccgggtctaagtaaaaacccgcggggaagttggcccggcgaaacccggtcgacc 18
Query: 96 cga 98
|||
Sbjct: 17 cga 15
>52020_ptc-miRf10198-akr:pmrd
Length = 110
Score = 69.9 bits (35), Expect = 4e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 31 atgaaaccggtccgggtctaagcaaaaactcgcctggaagttggtccggtgaaacccagt 90
|||| |||||||||||||||||||||||| ||||||| |||||| | | ||||||| ||
Sbjct: 33 atgagaccggtccgggtctaagcaaaaacccgcctgggagttggctcagcgaaacccggt 92
Query: 91 cgacccg 97
|||||||
Sbjct: 93 cgacccg 99
>53781_ptc-miRf11959-akr:pmrd
Length = 126
Score = 65.9 bits (33), Expect = 6e-12
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 35 aaccggtccgggtctaagcaaaaactcgcctggaagttggtccggtgaaacccagtcgac 94
|||||||||||||||||| |||||| || |||| |||||| |||| ||||||| ||||||
Sbjct: 84 aaccggtccgggtctaagtaaaaacccgtctgggagttggcccggagaaacccggtcgac 25
Query: 95 c 95
|
Sbjct: 24 c 24
>53680_ptc-miRf11858-akr:pmrd
Length = 112
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 69 agttggtccggtgaaacccagtcgacccgaggggtcgacccgag 112
|||||| |||||||||||| |||||||| |||||||||||||
Sbjct: 44 agttggcccggtgaaacccggtcgacccagcgggtcgacccgag 1
>53054_ptc-miRf11232-akr:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 8e-05
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 54 aaaaactcgcctggaagttggtccggtgaaacccagtcgacccgaggggtcgacccg 110
|||||| ||| ||| ||||| |||||||||||| |||||||| |||||||||||
Sbjct: 64 aaaaacccgcttgggagttgacccggtgaaacccgatcgacccggcgggtcgacccg 8
