miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51843_ptc-miRf10021-akr:pmrd
Length = 113
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 aatgtatgggtttggcatctatattagactcaatacagttggacttggcaatgcaccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 aatgtatgggtttggcatctatattagactcaatacagttggacttggcaatgcaccaag 64
Query: 61 tccaaggttgcgtgggtctgacacgcatgccagacccaatacgtt 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tccaaggttgcgtgggtctgacacgcatgccagacccaatacgtt 109
>51841_ptc-miRf10019-akr:pmrd
Length = 92
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 7 tgggtttggcatctatattagactcaatacagttggacttggcaatgcaccaagtccaag 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgggtttggcatctatattagactcaatacagttggacttggcaatgcaccaagtccaag 60
Query: 67 gttgcgtgggtctgacacgcatgccagaccca 98
||||||||||||||||||||||||||||||||
Sbjct: 61 gttgcgtgggtctgacacgcatgccagaccca 92
>52065_ptc-miRf10243-akr:pmrd
Length = 191
Score = 87.7 bits (44), Expect = 1e-18
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 39 ttggacttggcaatgcaccaagtccaaggttgcgtgggtctgacacgcatgccagaccca 98
|||||||||||| ||||||||||||||||| ||||||||||| ||||||||| |||| ||
Sbjct: 180 ttggacttggcagtgcaccaagtccaaggtagcgtgggtctggcacgcatgctagactca 121
Query: 99 atac 102
||||
Sbjct: 120 atac 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 72 gtgggtctgacacgcatgccagacccaatacg 103
||||||||| ||||||||||| || |||||||
Sbjct: 70 gtgggtctggcacgcatgccaaactcaatacg 39
>53886_ptc-miRf12064-akr:pmrd
Length = 111
Score = 63.9 bits (32), Expect = 2e-11
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 56 ccaagtccaaggttgcgtgggtctgacacgcatgccagacccaatacg 103
||||||||||||| | |||||||||||| |||||||| ||||||||||
Sbjct: 60 ccaagtccaaggtggtgtgggtctgacatgcatgccaaacccaatacg 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 gcgtgggtctgacacgcatgccag 93
||||||||||| ||||||||||||
Sbjct: 8 gcgtgggtctggcacgcatgccag 31
>52702_ptc-miRf10880-akr:pmrd
Length = 106
Score = 50.1 bits (25), Expect = 3e-07
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 39 ttggacttggcaatgcaccaagtccaaggttgcgtgggtctgacacgcatgccagaccca 98
|||||||| ||| ||| ||| ||||||||| | | |||||| |||||||||||||||||
Sbjct: 40 ttggacttagcagtgcgccaggtccaaggtgacataggtctggcacgcatgccagaccca 99
Query: 99 atacg 103
||||
Sbjct: 100 ctacg 104
>51955_ptc-miRf10133-akr:pmrd
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 71 cgtgggtctgacacgcatgccagaccca 98
||||||||| ||||||||||||||||||
Sbjct: 28 cgtgggtctaacacgcatgccagaccca 1
>51992_ptc-miRf10170-akr:pmrd
Length = 131
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 73 tgggtctgacacgcatgccagacccaata 101
||||||||||| ||||||||||||||||
Sbjct: 128 tgggtctgacattcatgccagacccaata 100
>52730_ptc-miRf10908-akr:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 39 ttggacttggcaatgcaccaagtccaaggttgcgtgggtctgacacgcatgccagaccca 98
|||||||| ||| | ||||||||| ||| | ||||||| ||||||||||| |||||||
Sbjct: 60 ttggacttagcagtacaccaagtctaagataacgtgggtttgacacgcatgttagaccca 1
