miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AY728400.1/2-73 3694:Populus trichocarpa
Length = 72
Score = 143 bits (72), Expect = 4e-34
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 8 tgttggagaagaagagcgcgtgcaaagtgtaagcacttcatcaggattttgcacgtgccc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 tgttggagaagaagagcgcgtgcaaagtgtaagcacttcatcaggattttgcacgtgccc 13
Query: 68 tgcttctccagc 79
||||||||||||
Sbjct: 12 tgcttctccagc 1
>RF00647;MIR164;AY871042.1/1-85 3694:Populus trichocarpa
Length = 85
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 50 aggattttgcacgtgccctgcttctccagc 79
||||||||||||||||||||||||||||||
Sbjct: 30 aggattttgcacgtgccctgcttctccagc 1
>RF00647;MIR164;FM162585.1/105-191 3451:Aquilegia vulgaris
Length = 87
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 55 tttgcacgtgccctgcttctccagcaagg 83
|||||||||||||||||||||||||||||
Sbjct: 33 tttgcacgtgccctgcttctccagcaagg 5
>RF00647;MIR164;AARH01005550.1/339945-339862 3694:Populus
trichocarpa
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 56 ttgcacgtgccctgcttctccagcaag 82
|||||||||||||||||||||||||||
Sbjct: 32 ttgcacgtgccctgcttctccagcaag 6
>RF00647;MIR164;AASG02000861.1/36470-36555 3988:Ricinus communis
(castor bean)
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 56 ttgcacgtgccctgcttctccagcaag 82
|||||||||||||||||||||||||||
Sbjct: 32 ttgcacgtgccctgcttctccagcaag 6
>RF00647;MIR164;AASG02000423.1/48609-48498 3988:Ricinus communis
(castor bean)
Length = 112
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 55 tttgcacgtgccctgcttctccagca 80
||||||||||||||||||||||||||
Sbjct: 33 tttgcacgtgccctgcttctccagca 8
>RF00647;MIR164;AC189657.2/5377-5278 51351:Brassica rapa subsp.
pekinensis
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 58 gcacgtgccctgcttctccagcaag 82
|||||||||||||||||||||||||
Sbjct: 30 gcacgtgccctgcttctccagcaag 6
>RF00647;MIR164;AC189579.2/50985-50886 51351:Brassica rapa subsp.
pekinensis
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 58 gcacgtgccctgcttctccagcaag 82
|||||||||||||||||||||||||
Sbjct: 30 gcacgtgccctgcttctccagcaag 6
>RF00647;MIR164;DQ090016.1/221-315 13451:Corylus avellana
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 56 ttgcacgtgccctgcttctccagcaagga 84
|||||||||||||||||||||| ||||||
Sbjct: 32 ttgcacgtgccctgcttctccaacaagga 4
>RF00647;MIR164;ABIM01024497.1/24000-24085 3649:Carica papaya
(papaya)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 55 tttgcacgtgccctgcttctccagcaag 82
||||||||||||||||||||||| ||||
Sbjct: 33 tttgcacgtgccctgcttctccaacaag 6
>RF00647;MIR164;CAAP02000002.1/260390-260272 29760:Vitis vinifera
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 57 tgcacgtgccctgcttctccagcaagga 84
||||||||||||||||||||| ||||||
Sbjct: 31 tgcacgtgccctgcttctccaacaagga 4
>RF00647;MIR164;ABIM01003254.1/2406-2491 3649:Carica papaya
(papaya)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 55 tttgcacgtgccctgcttctcca 77
|||||||||||||||||||||||
Sbjct: 33 tttgcacgtgccctgcttctcca 11
>RF00647;MIR164;EU548715.1/244-341 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 55 tttgcacgtgccctgcttctcca 77
|||||||||||||||||||||||
Sbjct: 33 tttgcacgtgccctgcttctcca 11
>RF00647;MIR164;AC167403.2/113120-113214 3880:Medicago truncatula
(barrel medic)
Length = 95
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ttgcacgtgccctgcttctccagcaag 82
|||||||||||||||||||||| ||||
Sbjct: 32 ttgcacgtgccctgcttctccaacaag 6
>RF00647;MIR164;FM162584.1/200-286 3451:Aquilegia vulgaris
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 58 gcacgtgccctgcttctccagca 80
|||||||||||||||||||||||
Sbjct: 30 gcacgtgccctgcttctccagca 8
>RF00647;MIR164;FM162588.1/798-884 310672:Cabomba aquatica
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 58 gcacgtgccctgcttctccagca 80
|||||||||||||||||||||||
Sbjct: 30 gcacgtgccctgcttctccagca 8
>RF00647;MIR164;ABXC01002969.1/79278-79187 4558:Sorghum bicolor
(sorghum)
Length = 92
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 58 gcacgtgccctgcttctccagca 80
|||||||||||||||||||||||
Sbjct: 30 gcacgtgccctgcttctccagca 8
>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
(sorghum)
Length = 179
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 57 tgcacgtgccctgcttctccagc 79
|||||||||||||||||||||||
Sbjct: 31 tgcacgtgccctgcttctccagc 9
>RF00647;MIR164;AP004257.3/77813-77720 39947:Oryza sativa Japonica
Group
Length = 94
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 58 gcacgtgccctgcttctccagca 80
|||||||||||||||||||||||
Sbjct: 30 gcacgtgccctgcttctccagca 8
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 56 ttgcacgtgccctgcttctcca 77
||||||||||||||||||||||
Sbjct: 32 ttgcacgtgccctgcttctcca 11
>RF00647;MIR164;AC235335.1/132786-132675 3847:Glycine max
(soybean)
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 56 ttgcacgtgccctgcttctcca 77
||||||||||||||||||||||
Sbjct: 32 ttgcacgtgccctgcttctcca 11
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 56 ttgcacgtgccctgcttctcca 77
||||||||||||||||||||||
Sbjct: 32 ttgcacgtgccctgcttctcca 11
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 56 ttgcacgtgccctgcttctcca 77
||||||||||||||||||||||
Sbjct: 32 ttgcacgtgccctgcttctcca 11
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 56 ttgcacgtgccctgcttctcca 77
||||||||||||||||||||||
Sbjct: 32 ttgcacgtgccctgcttctcca 11
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 57 tgcacgtgccctgcttctccagcaag 82
||||||||||||||||||||| ||||
Sbjct: 31 tgcacgtgccctgcttctccatcaag 6
>RF00647;MIR164;AAAA02016828.1/18978-18860 39946:Oryza sativa
Indica Group
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 53 attttgcacgtgccctgcttctccagcaag 82
||||||||||| ||||||||||||| ||||
Sbjct: 35 attttgcacgtaccctgcttctccaacaag 6
