miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32066_mmu-mir-423:mirbase
Length = 109
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 ggaaataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ggaaataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagct 68
Query: 61 cggtctgaggcccctcagtcttgcttcctaccccgc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 69 cggtctgaggcccctcagtcttgcttcctaccccgc 104
>32067_mmu-mir-423:mirbase
Length = 109
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 ggaaataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ggaaataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagct 68
Query: 61 cggtctgaggcccctcagtcttgcttcctaccccgc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 69 cggtctgaggcccctcagtcttgcttcctaccccgc 104
>27898_mml-mir-423:mirbase
Length = 94
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 5 ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 60
Query: 65 ctgaggcccctcagtcttgcttcctaccccgc 96
||||||||||||||||||||||||||||||||
Sbjct: 61 ctgaggcccctcagtcttgcttcctaccccgc 92
>27899_mml-mir-423:mirbase
Length = 94
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 5 ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 60
Query: 65 ctgaggcccctcagtcttgcttcctaccccgc 96
||||||||||||||||||||||||||||||||
Sbjct: 61 ctgaggcccctcagtcttgcttcctaccccgc 92
>30370_ptr-mir-423:mirbase
Length = 93
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 5 ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 60
Query: 65 ctgaggcccctcagtcttgcttcctaccccgc 96
||||||||||||||||||||||||||||||||
Sbjct: 61 ctgaggcccctcagtcttgcttcctaccccgc 92
>33367_bta-mir-423:mirbase
Length = 94
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 5 ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 60
Query: 65 ctgaggcccctcagtcttgcttcctaccccgc 96
||||||||||||||||||||||||||||||||
Sbjct: 61 ctgaggcccctcagtcttgcttcctaccccgc 92
>33368_bta-mir-423:mirbase
Length = 94
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 5 ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 60
Query: 65 ctgaggcccctcagtcttgcttcctaccccgc 96
||||||||||||||||||||||||||||||||
Sbjct: 61 ctgaggcccctcagtcttgcttcctaccccgc 92
>28645_hsa-mir-423:mirbase
Length = 94
Score = 174 bits (88), Expect = 7e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 5 ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 60
Query: 65 ctgaggcccctcagtcttgcttcctaccccgc 96
|||||||||||||||||||||||||| |||||
Sbjct: 61 ctgaggcccctcagtcttgcttcctaacccgc 92
>28646_hsa-mir-423:mirbase
Length = 94
Score = 174 bits (88), Expect = 7e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 5 ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataaaggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggt 60
Query: 65 ctgaggcccctcagtcttgcttcctaccccgc 96
|||||||||||||||||||||||||| |||||
Sbjct: 61 ctgaggcccctcagtcttgcttcctaacccgc 92
>30999_ppy-mir-423:mirbase
Length = 90
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 9 aggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctga 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctga 60
Query: 69 ggcccctcagtcttgcttcctaccccgc 96
||||||||||||||||||||||||||||
Sbjct: 61 ggcccctcagtcttgcttcctaccccgc 88
>31000_ppy-mir-423:mirbase
Length = 90
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 9 aggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctga 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctga 60
Query: 69 ggcccctcagtcttgcttcctaccccgc 96
||||||||||||||||||||||||||||
Sbjct: 61 ggcccctcagtcttgcttcctaccccgc 88
>34089_ssc-mir-423:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 12 aagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggc 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggc 60
Query: 72 ccctcagtcttgcttcctac 91
||||||||||||||||||||
Sbjct: 61 ccctcagtcttgcttcctac 80
>34090_ssc-mir-423:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 12 aagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggc 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggc 60
Query: 72 ccctcagtcttgcttcctac 91
||||||||||||||||||||
Sbjct: 61 ccctcagtcttgcttcctac 80
>32908_rno-mir-423:mirbase
Length = 79
Score = 157 bits (79), Expect = 2e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 11 gaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgagg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgagg 60
Query: 71 cccctcagtcttgcttcct 89
|||||||||||||||||||
Sbjct: 61 cccctcagtcttgcttcct 79
>29349_hsa-mir-3184:mirbase
Length = 75
Score = 149 bits (75), Expect = 4e-37
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 12 aagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggc 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 aagttaggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggc 16
Query: 72 ccctcagtcttgctt 86
|||||||||||||||
Sbjct: 15 ccctcagtcttgctt 1
>27173_eca-mir-423:mirbase
Length = 63
Score = 125 bits (63), Expect = 6e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 17 aggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggcccctc 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggcccctc 60
Query: 77 agt 79
|||
Sbjct: 61 agt 63
>27174_eca-mir-423:mirbase
Length = 63
Score = 125 bits (63), Expect = 6e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 17 aggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggcccctc 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggctgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggcccctc 60
Query: 77 agt 79
|||
Sbjct: 61 agt 63
>26840_cfa-mir-423a:mirbase
Length = 59
Score = 117 bits (59), Expect = 1e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 21 tgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggcccctcagt 79
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaggggcagagagcgagacttttctattttccaaaagctcggtctgaggcccctcagt 59
