miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51872_ptc-miRf10050-akr:pmrd
Length = 138
Score = 274 bits (138), Expect = 2e-74
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 gttataacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttataacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactc 60
Query: 61 tctttgctaaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctttgctaaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccat 120
Query: 121 tgattaagatggtataat 138
||||||||||||||||||
Sbjct: 121 tgattaagatggtataat 138
>52769_ptc-miRf10947-akr:pmrd
Length = 124
Score = 246 bits (124), Expect = 4e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 8 catcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgc 60
Query: 68 taaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaa 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaa 120
Query: 128 gatg 131
||||
Sbjct: 121 gatg 124
>51870_ptc-miRf10048-akr:pmrd
Length = 124
Score = 246 bits (124), Expect = 4e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 8 catcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgc 60
Query: 68 taaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaa 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaa 120
Query: 128 gatg 131
||||
Sbjct: 121 gatg 124
>51770_ptc-miR475a:pmrd
Length = 124
Score = 246 bits (124), Expect = 4e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 8 catcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgc 60
Query: 68 taaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaa 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaa 120
Query: 128 gatg 131
||||
Sbjct: 121 gatg 124
>53811_ptc-miRf11989-akr:pmrd
Length = 128
Score = 167 bits (84), Expect = 3e-42
Identities = 117/127 (92%), Gaps = 2/127 (1%)
Strand = Plus / Plus
Query: 5 taacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctt 60
Query: 65 tgctaaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgat 124
|||| ||||||| || || || ||||| || ||||||| |||||||||||||||||||
Sbjct: 61 tgctgaaatgtgcgaccaa--atagactcttgatatttcattcttacagtgcccattgat 118
Query: 125 taagatg 131
|||||||
Sbjct: 119 taagatg 125
>52353_ptc-miRf10531-akr:pmrd
Length = 128
Score = 167 bits (84), Expect = 3e-42
Identities = 117/127 (92%), Gaps = 2/127 (1%)
Strand = Plus / Plus
Query: 5 taacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctt 60
Query: 65 tgctaaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgat 124
|||| ||||||| || || || ||||| || ||||||| |||||||||||||||||||
Sbjct: 61 tgctgaaatgtgcgaccaa--atagactcttgatatttcattcttacagtgcccattgat 118
Query: 125 taagatg 131
|||||||
Sbjct: 119 taagatg 125
>51771_ptc-miR475b:pmrd
Length = 120
Score = 157 bits (79), Expect = 3e-39
Identities = 112/122 (91%), Gaps = 2/122 (1%)
Strand = Plus / Plus
Query: 9 atcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgct 60
Query: 69 aaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 128
||||||| || || || ||||| || ||||||| |||||||||||||||||||||||
Sbjct: 61 gaaatgtgcgaccaa--atagactcttgatatttcattcttacagtgcccattgattaag 118
Query: 129 at 130
||
Sbjct: 119 at 120
>51773_ptc-miR475d:pmrd
Length = 103
Score = 93.7 bits (47), Expect = 3e-20
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 4 ataacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaa 54
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataacatcctgatcaatggccattgtaagagtagaaggatccatgaagcaa 51
Score = 69.9 bits (35), Expect = 5e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 81 aaaacattgactcctggtatttcactcttacagtgcccattgattaagatg 131
|||||||||||||||| |||| ||||||||||| | |||||||||||||||
Sbjct: 50 aaaacattgactcctgatattccactcttacagagtccattgattaagatg 100
>53810_ptc-miRf11988-akr:pmrd
Length = 102
Score = 91.7 bits (46), Expect = 1e-19
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 5 taacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaa 54
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taacatcctgatcaatggccattgtaagagtagaaggatccatgaagcaa 50
Score = 69.9 bits (35), Expect = 5e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 81 aaaacattgactcctggtatttcactcttacagtgcccattgattaagatg 131
|||||||||||||||| |||| ||||||||||| | |||||||||||||||
Sbjct: 49 aaaacattgactcctgatattccactcttacagagtccattgattaagatg 99
>51772_ptc-miR475c:pmrd
Length = 125
Score = 85.7 bits (43), Expect = 8e-18
Identities = 106/125 (84%), Gaps = 4/125 (3%)
Strand = Plus / Plus
Query: 5 taacatcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctt 64
||||||||||| |||||||||||||||||||| | | ||||||| |||||||||||||
Sbjct: 1 taacatcttgaacaatggccattgtaagagta-agtggtccatgagtcaataactctctt 59
Query: 65 tgctaaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgat 124
||| ||||| ||| ||| |||||||||| |||||||| |||||| || ||||||||
Sbjct: 60 tgcagaaatgcatgacaaagcattgactcc---tatttcacccttacaatgtccattgat 116
Query: 125 taaga 129
|||||
Sbjct: 117 taaga 121