miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00678;mir-140;AADN02054178.1/9586-9683 9031:Gallus gallus
(chicken)
Length = 98
Score = 129 bits (65), Expect = 8e-30
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 18 tcctgccggtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaa 77
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 tcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaa 74
Query: 78 ccacggacaggat 90
|||||||| ||||
Sbjct: 75 ccacggacgggat 87
>RF00678;mir-140;AAVX01038725.1/2937-3034 7868:Callorhinchus milii
(ghost shark)
Length = 98
Score = 129 bits (65), Expect = 8e-30
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 26 gtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacggac 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 gtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacggac 82
Query: 86 aggatactg 94
||| |||||
Sbjct: 83 aggctactg 91
>RF00678;mir-140;ABRO01131757.1/4897-4800 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 98
Score = 125 bits (63), Expect = 1e-28
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 26 gtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacggac 85
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 23 gtggttttaccctatggtaggttacatcatgctgttctaccacagggtagaaccacggac 82
Query: 86 aggatac 92
|||||||
Sbjct: 83 aggatac 89
>RF00678;mir-140;BAAF04008549.1/880-978 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 105 bits (53), Expect = 1e-22
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 26 gtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacggac 85
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 24 gtggttttaccctatggtaggtgacatcatgctgttctaccacagggtagaaccacggac 83
Query: 86 aggat 90
||||
Sbjct: 84 gggat 88
