miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53711_ptc-miRf11889-akr:pmrd
Length = 75
Score = 50.1 bits (25), Expect = 4e-07
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 67 caagtgccttgggtgtagcagccatgccaaacccaagcgtcttgggtct 115
|||||||||||| | | |||||||||| | ||||||||| |||||||||
Sbjct: 58 caagtgccttggatcttgcagccatgcaagacccaagcgccttgggtct 10
>53483_ptc-miRf11661-akr:pmrd
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 84 gcagccatgccaaacccaagcgtcttgggtct 115
|||||||||||| ||||||||||||| |||||
Sbjct: 76 gcagccatgccagacccaagcgtctttggtct 45
>53482_ptc-miRf11660-akr:pmrd
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 84 gcagccatgccaaacccaagcgtcttgggtct 115
|||||||||||| ||||||||||||| |||||
Sbjct: 81 gcagccatgccagacccaagcgtctttggtct 50
>53453_ptc-miRf11631-akr:pmrd
Length = 146
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 82 tagcagccatgccaaacccaagcgtcttgggt 113
||||| |||||||| |||||||||||||||||
Sbjct: 136 tagcacccatgccagacccaagcgtcttgggt 105
>52181_ptc-miRf10359-akr:pmrd
Length = 148
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 82 tagcagccatgccaaacccaagcgtcttgggt 113
||||| |||||||| |||||||||||||||||
Sbjct: 137 tagcacccatgccagacccaagcgtcttgggt 106
>54175_ptc-miRf12353-akr:pmrd
Length = 74
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 91 tgccaaacccaagcgtcttgggtctgg 117
|||||||||||||| ||||||||||||
Sbjct: 35 tgccaaacccaagcatcttgggtctgg 9
>52107_ptc-miRf10285-akr:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 87 gccatgccaaacccaagcgtcttgggtct 115
||||||||||||||||| ||||| |||||
Sbjct: 35 gccatgccaaacccaagagtctttggtct 63
>53761_ptc-miRf11939-akr:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 88 ccatgccaaacccaagcgtcttgggtct 115
|||||||||||||||| ||||||||||
Sbjct: 36 ccatgccaaacccaaggttcttgggtct 9
