miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52246_ptc-miRf10424-akr:pmrd
Length = 84
Score = 95.6 bits (48), Expect = 6e-21
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 9 ttaccgacggaatcaaagacggaaatgatccatcggtgaatcgttcgtcggtaatgtttt 68
||||| ||||||||| |||| ||||| |||||||||||||| || ||||||||| ||||
Sbjct: 1 ttaccaacggaatcaccgacgaaaatgttccatcggtgaatcttttgtcggtaatttttt 60
Query: 69 gtccgtcggtaaatccgttggtaa 92
|||||||||||||||||||||||
Sbjct: 61 atccgtcggtaaatccgttggtaa 84
>51929_ptc-miRf10107-akr:pmrd
Length = 84
Score = 85.7 bits (43), Expect = 6e-18
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 26 gacggaaatgatccatcggtgaatcgttcgtcggtaatgttttgtccgtcggtaaatccg 85
||||||||||||| |||||||||| ||| |||||||| ||| |||||||||||||||||
Sbjct: 18 gacggaaatgatctgtcggtgaatctttcatcggtaatttttagtccgtcggtaaatccg 77
Query: 86 ttggtaa 92
|||||||
Sbjct: 78 ttggtaa 84
>53628_ptc-miRf11806-akr:pmrd
Length = 146
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 9 ttaccgacggaatcaaagacggaaatgatccatcggtgaatcgttcgtcggtaatgtttt 68
|||||||| |||||| |||||||||| | | |||||||||| |||| ||||||| ||||
Sbjct: 9 ttaccgacagaatcaccgacggaaatgcttcgtcggtgaatctttcgccggtaatttttt 68
Query: 69 gtccgtcggtaaatccgttggtaata 94
|||||||||||||||||||||||||
Sbjct: 69 -tccgtcggtaaatccgttggtaata 93
>53968_ptc-miRf12146-akr:pmrd
Length = 145
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 52 ttcgtcggtaatgttttgtccgtcggtaaatccgttggtaa 92
|||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3 ttcgtcggtaattttttgtccgtcggtaaatccgttggtaa 43
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 52 ttcgtcggtaatgttttgtccgtcggtaaatccgttgg 89
|||||||||||| |||||||||||||||||||||||||
Sbjct: 143 ttcgtcggtaattttttgtccgtcggtaaatccgttgg 106
>53128_ptc-miRf11306-akr:pmrd
Length = 145
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 52 ttcgtcggtaatgttttgtccgtcggtaaatccgttggtaa 92
|||||||||||| ||||||||||||||||||||||||||||
Sbjct: 143 ttcgtcggtaattttttgtccgtcggtaaatccgttggtaa 103
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 52 ttcgtcggtaatgttttgtccgtcggtaaatccgttgg 89
|||||||||||| |||||||||||||||||||||||||
Sbjct: 3 ttcgtcggtaattttttgtccgtcggtaaatccgttgg 40
>54164_ptc-miRf12342-akr:pmrd
Length = 65
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 63 tgttttgtccgtcggtaaatccgttggtaatataatta 100
|||||||||||||||||||||||||||||||| |||||
Sbjct: 1 tgttttgtccgtcggtaaatccgttggtaatagaatta 38
>53290_ptc-miRf11468-akr:pmrd
Length = 65
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 63 tgttttgtccgtcggtaaatccgttggtaatataatta 100
|||||||||||||||||||||||||||||||| |||||
Sbjct: 1 tgttttgtccgtcggtaaatccgttggtaatagaatta 38
>53338_ptc-miRf11516-akr:pmrd
Length = 63
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 64 gttttgtccgtcggtaaatccgttggtaatataatta 100
||||||||||||||||||||||||||||||| |||||
Sbjct: 1 gttttgtccgtcggtaaatccgttggtaatagaatta 37
>52825_ptc-miRf11003-akr:pmrd
Length = 63
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 64 gttttgtccgtcggtaaatccgttggtaatataatta 100
||||||||||||||||||||||||||||||| |||||
Sbjct: 1 gttttgtccgtcggtaaatccgttggtaatagaatta 37
>53738_ptc-miRf11916-akr:pmrd
Length = 86
Score = 60.0 bits (30), Expect = 3e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 40 atcggtgaatcgttcgtcggtaatgttttgtccgtcggtaaatccgttggtaat 93
||||||||||| || ||||||||| |||| |||| |||||| ||||||||||||
Sbjct: 33 atcggtgaatcttttgtcggtaattttttatccgccggtaagtccgttggtaat 86
>53693_ptc-miRf11871-akr:pmrd
Length = 74
Score = 60.0 bits (30), Expect = 3e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 9 ttaccgacggaatcaaagacggaaatgatccatcggtgaatcgttcgtcggtaa 62
||||||| ||||||| |||||||||| ||| |||||||||| |||||||||||
Sbjct: 11 ttaccgatggaatcaccgacggaaatgctccgtcggtgaatctttcgtcggtaa 64
>52697_ptc-miRf10875-akr:pmrd
Length = 69
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 66 tttgtccgtcggtaaatccgttggtaata 94
|||||||||||||||||||||||||||||
Sbjct: 1 tttgtccgtcggtaaatccgttggtaata 29
>52768_ptc-miRf10946-akr:pmrd
Length = 109
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 56 tcggtaatgttttgtccgtcggtaaatccgttggtaat 93
||||||||||||||||||||| ||| ||||| ||||||
Sbjct: 61 tcggtaatgttttgtccgtcgataattccgtcggtaat 24
>51998_ptc-miRf10176-akr:pmrd
Length = 111
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 71 ccgtcggtaaatccgttggtaata 94
||||||||||||||||||||||||
Sbjct: 109 ccgtcggtaaatccgttggtaata 86
>54290_ptc-miRf12468-akr:pmrd
Length = 74
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggtaa 92
|||||||||||||||||||||||
Sbjct: 52 tccgtcggtaaatccgttggtaa 74
>54140_ptc-miRf12318-akr:pmrd
Length = 74
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggtaa 92
|||||||||||||||||||||||
Sbjct: 52 tccgtcggtaaatccgttggtaa 74
>53780_ptc-miRf11958-akr:pmrd
Length = 74
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggtaa 92
|||||||||||||||||||||||
Sbjct: 52 tccgtcggtaaatccgttggtaa 74
>53755_ptc-miRf11933-akr:pmrd
Length = 74
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggtaa 92
|||||||||||||||||||||||
Sbjct: 40 tccgtcggtaaatccgttggtaa 62
>53754_ptc-miRf11932-akr:pmrd
Length = 74
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggtaa 92
|||||||||||||||||||||||
Sbjct: 40 tccgtcggtaaatccgttggtaa 62
>53495_ptc-miRf11673-akr:pmrd
Length = 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggtaa 92
|||||||||||||||||||||||
Sbjct: 39 tccgtcggtaaatccgttggtaa 61
>53269_ptc-miRf11447-akr:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggtaa 92
|||||||||||||||||||||||
Sbjct: 53 tccgtcggtaaatccgttggtaa 75
>53151_ptc-miRf11329-akr:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggtaa 92
|||||||||||||||||||||||
Sbjct: 53 tccgtcggtaaatccgttggtaa 75
>52634_ptc-miRf10812-akr:pmrd
Length = 74
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggtaa 92
|||||||||||||||||||||||
Sbjct: 52 tccgtcggtaaatccgttggtaa 74
>52549_ptc-miRf10727-akr:pmrd
Length = 74
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggtaa 92
|||||||||||||||||||||||
Sbjct: 52 tccgtcggtaaatccgttggtaa 74
>52333_ptc-miRf10511-akr:pmrd
Length = 74
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggtaa 92
|||||||||||||||||||||||
Sbjct: 52 tccgtcggtaaatccgttggtaa 74
>54260_ptc-miRf12438-akr:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 77 tccgtcggtaaatccgttggta 98
>54249_ptc-miRf12427-akr:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 77 tccgtcggtaaatccgttggta 98
>54168_ptc-miRf12346-akr:pmrd
Length = 146
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 117 tccgtcggtaaatccgttggta 138
>54012_ptc-miRf12190-akr:pmrd
Length = 148
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 118 tccgtcggtaaatccgttggta 139
>53917_ptc-miRf12095-akr:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 77 tccgtcggtaaatccgttggta 98
>53822_ptc-miRf12000-akr:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 77 tccgtcggtaaatccgttggta 98
>53779_ptc-miRf11957-akr:pmrd
Length = 146
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 117 tccgtcggtaaatccgttggta 138
>53778_ptc-miRf11956-akr:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 77 tccgtcggtaaatccgttggta 98
>53707_ptc-miRf11885-akr:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 9 ttaccgacggaatcaaagacggaaatgatccatcggtgaatc 50
||||||||||||||| ||||||||||||| ||||| ||||
Sbjct: 47 ttaccgacggaatcaccaacggaaatgatccgtcggtaaatc 6
>53659_ptc-miRf11837-akr:pmrd
Length = 146
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 117 tccgtcggtaaatccgttggta 138
>53571_ptc-miRf11749-akr:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 77 tccgtcggtaaatccgttggta 98
>53529_ptc-miRf11707-akr:pmrd
Length = 148
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 118 tccgtcggtaaatccgttggta 139
>53512_ptc-miRf11690-akr:pmrd
Length = 146
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 117 tccgtcggtaaatccgttggta 138
>53365_ptc-miRf11543-akr:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 77 tccgtcggtaaatccgttggta 98
>53329_ptc-miRf11507-akr:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 77 tccgtcggtaaatccgttggta 98
>53328_ptc-miRf11506-akr:pmrd
Length = 146
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 117 tccgtcggtaaatccgttggta 138
>53230_ptc-miRf11408-akr:pmrd
Length = 146
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 117 tccgtcggtaaatccgttggta 138
>53161_ptc-miRf11339-akr:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 74 tccgtcggtaaatccgttggta 95
>53160_ptc-miRf11338-akr:pmrd
Length = 146
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 117 tccgtcggtaaatccgttggta 138
>53133_ptc-miRf11311-akr:pmrd
Length = 145
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 116 tccgtcggtaaatccgttggta 137
>52631_ptc-miRf10809-akr:pmrd
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 gtcggtaaatccgttggtaata 94
||||||||||||||||||||||
Sbjct: 5 gtcggtaaatccgttggtaata 26
>52597_ptc-miRf10775-akr:pmrd
Length = 182
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 154 tccgtcggtaaatccgttggta 175
>52416_ptc-miRf10594-akr:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 77 tccgtcggtaaatccgttggta 98
>52142_ptc-miRf10320-akr:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 77 tccgtcggtaaatccgttggta 98
>52139_ptc-miRf10317-akr:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggta 91
||||||||||||||||||||||
Sbjct: 77 tccgtcggtaaatccgttggta 98
>53370_ptc-miRf11548-akr:pmrd
Length = 146
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 ccgtcggtaaatccgttggta 91
|||||||||||||||||||||
Sbjct: 118 ccgtcggtaaatccgttggta 138
>52511_ptc-miRf10689-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggtaata 94
|||||| ||||||||||||||||||
Sbjct: 2 tccgtcagtaaatccgttggtaata 26
>54221_ptc-miRf12399-akr:pmrd
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggtaat 93
||||||||||||||||| ||||||
Sbjct: 103 tccgtcggtaaatccgtcggtaat 126
>54049_ptc-miRf12227-akr:pmrd
Length = 75
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 70 tccgtcggtaaatccgttggtaat 93
||||||||||||||||| ||||||
Sbjct: 31 tccgtcggtaaatccgtcggtaat 8
>53834_ptc-miRf12012-akr:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 tccgtcggtaaatccgttggtaat 93
||||||||||||||||| ||||||
Sbjct: 54 tccgtcggtaaatccgtcggtaat 77
>53361_ptc-miRf11539-akr:pmrd
Length = 146
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 cgtcggtaaatccgttggta 91
||||||||||||||||||||
Sbjct: 119 cgtcggtaaatccgttggta 138
