miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53371_ptc-miRf11549-akr:pmrd
Length = 93
Score = 75.8 bits (38), Expect = 5e-15
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggtttgtcaaaagaccagccggtgcaacggcac 70
|||||||| || ||||||||| ||||||||||||||||||| | |||||||||| | |
Sbjct: 92 ggtcgacctgggggctggaccgttccgggtttgtcaaaagactggtcggtgcaacgactc 33
Query: 71 ggccaaacccggtc 84
||||||||||||||
Sbjct: 32 ggccaaacccggtc 19
>52252_ptc-miRf10430-akr:pmrd
Length = 113
Score = 65.9 bits (33), Expect = 5e-12
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 37 gggtttgtcaaaagaccagccggtgcaacggcacggccaaacccggtcgacccatgaccc 96
||||||||||||||||| | ||| |||||| | || ||||||| ||||||||||||||||
Sbjct: 70 gggtttgtcaaaagaccggtcggggcaacgacccgaccaaacctggtcgacccatgaccc 11
Query: 97 g 97
|
Sbjct: 10 g 10
>54004_ptc-miRf12182-akr:pmrd
Length = 127
Score = 63.9 bits (32), Expect = 2e-11
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 14 cgacccggtggctggaccagtccgggtttgtcaaaagaccagccggtgcaacggcacggc 73
|||||||| ||||||||| || |||||||||||||||||| | | ||||||| | |||
Sbjct: 100 cgacccgggggctggaccggttcgggtttgtcaaaagaccggtcaatgcaacgacccggt 41
Query: 74 caaacccggtcgaccc 89
||||||| ||||||||
Sbjct: 40 caaacccagtcgaccc 25
>52823_ptc-miRf11001-akr:pmrd
Length = 129
Score = 63.9 bits (32), Expect = 2e-11
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 13 tcgacccggtggctggaccagtccgggtttgtcaaaagaccagccggtgcaacggcacgg 72
||||||||||||||||||| ||| |||||| | |||||||| || || ||||| || |||
Sbjct: 108 tcgacccggtggctggaccggtctgggtttattaaaagaccggctggggcaacagcccgg 49
Query: 73 ccaaacccggtcgacc 88
||||||||| |||||
Sbjct: 48 tcaaacccgggcgacc 33
>53790_ptc-miRf11968-akr:pmrd
Length = 91
Score = 61.9 bits (31), Expect = 8e-11
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggtttgtcaaaagacc 53
||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 43 ggtcgacccggtggctggaccggtccgggtttaacaaaagacc 1
>53671_ptc-miRf11849-akr:pmrd
Length = 94
Score = 61.9 bits (31), Expect = 8e-11
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggtttgtcaaaagacc 53
||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 43 ggtcgacccggtggctggaccggtccgggtttaacaaaagacc 1
>54259_ptc-miRf12437-akr:pmrd
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 9 cgggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||||| ||||||||||
Sbjct: 48 cgggtcgacccggtggctggaccggtccgggttt 15
>53858_ptc-miRf12036-akr:pmrd
Length = 77
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 9 cgggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||||| ||||||||||
Sbjct: 46 cgggtcgacccggtggctggaccggtccgggttt 13
>53728_ptc-miRf11906-akr:pmrd
Length = 62
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 9 cgggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||||| ||||||||||
Sbjct: 39 cgggtcgacccggtggctggaccggtccgggttt 6
>53352_ptc-miRf11530-akr:pmrd
Length = 75
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 9 cgggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||||| ||||||||||
Sbjct: 45 cgggtcgacccggtggctggaccggtccgggttt 12
>53249_ptc-miRf11427-akr:pmrd
Length = 77
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 9 cgggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||||| ||||||||||
Sbjct: 45 cgggtcgacccggtggctggaccggtccgggttt 12
>52967_ptc-miRf11145-akr:pmrd
Length = 62
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 9 cgggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||||| ||||||||||
Sbjct: 39 cgggtcgacccggtggctggaccggtccgggttt 6
>52951_ptc-miRf11129-akr:pmrd
Length = 62
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 9 cgggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||||| ||||||||||
Sbjct: 39 cgggtcgacccggtggctggaccggtccgggttt 6
>52345_ptc-miRf10523-akr:pmrd
Length = 125
Score = 58.0 bits (29), Expect = 1e-09
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 16 acccggtggctggaccagtccgggtttgtcaaaagaccagccggtgcaacggcacgg 72
||||||| |||||||| | |||||||| ||||||||| |||||||||||| |||||
Sbjct: 102 acccggtagctggaccgattcgggtttgccaaaagaccggccggtgcaacgacacgg 46
>54357_ptc-miRf12535-akr:pmrd
Length = 78
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||| ||||||||||
Sbjct: 43 ggtcgacccggtggctggaccggtccgggttt 12
>54232_ptc-miRf12410-akr:pmrd
Length = 78
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||| ||||||||||
Sbjct: 37 ggtcgacccggtggctggaccggtccgggttt 6
>54062_ptc-miRf12240-akr:pmrd
Length = 78
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||| ||||||||||
Sbjct: 37 ggtcgacccggtggctggaccggtccgggttt 6
>54046_ptc-miRf12224-akr:pmrd
Length = 97
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||| ||||||||||
Sbjct: 46 ggtcgacccggtggctggaccggtccgggttt 15
>53956_ptc-miRf12134-akr:pmrd
Length = 91
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||| ||||||||||
Sbjct: 43 ggtcgacccggtggctggaccggtccgggttt 12
>53888_ptc-miRf12066-akr:pmrd
Length = 78
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||| ||||||||||
Sbjct: 37 ggtcgacccggtggctggaccggtccgggttt 6
>53720_ptc-miRf11898-akr:pmrd
Length = 78
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||| ||||||||||
Sbjct: 37 ggtcgacccggtggctggaccggtccgggttt 6
>53648_ptc-miRf11826-akr:pmrd
Length = 79
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||| ||||||||||
Sbjct: 33 ggtcgacccggtggctggaccggtccgggttt 64
>53618_ptc-miRf11796-akr:pmrd
Length = 78
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||| ||||||||||
Sbjct: 36 ggtcgacccggtggctggaccggtccgggttt 67
>53498_ptc-miRf11676-akr:pmrd
Length = 97
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||| ||||||||||
Sbjct: 46 ggtcgacccggtggctggaccggtccgggttt 15
>53383_ptc-miRf11561-akr:pmrd
Length = 94
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||| ||||||||||
Sbjct: 46 ggtcgacccggtggctggaccggtccgggttt 15
>53068_ptc-miRf11246-akr:pmrd
Length = 86
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||| ||||||||||
Sbjct: 43 ggtcgacccggtggctggaccggtccgggttt 12
>53000_ptc-miRf11178-akr:pmrd
Length = 78
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||| ||||||||||
Sbjct: 37 ggtcgacccggtggctggaccggtccgggttt 6
>52986_ptc-miRf11164-akr:pmrd
Length = 78
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||| ||||||||||
Sbjct: 37 ggtcgacccggtggctggaccggtccgggttt 6
>52796_ptc-miRf10974-akr:pmrd
Length = 96
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||| ||||||||||
Sbjct: 47 ggtcgacccggtggctggaccggtccgggttt 16
>52253_ptc-miRf10431-akr:pmrd
Length = 92
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||||| ||||||||||
Sbjct: 43 ggtcgacccggtggctggaccggtccgggttt 74
>53350_ptc-miRf11528-akr:pmrd
Length = 78
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 12 gtcgacccggtggctggaccagtccgggttt 42
|||||||||||||||||||| ||||||||||
Sbjct: 36 gtcgacccggtggctggaccggtccgggttt 6
>52971_ptc-miRf11149-akr:pmrd
Length = 68
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 12 gtcgacccggtggctggaccagtccgggttt 42
|||||||||||||||||||| ||||||||||
Sbjct: 30 gtcgacccggtggctggaccggtccgggttt 60
>51849_ptc-miRf10027-akr:pmrd
Length = 115
Score = 54.0 bits (27), Expect = 2e-08
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 19 cggtggctggaccagtccgggtttgtcaaaagaccagccggtgcaacggcacggccaaac 78
||||||||||||| || || |||| | |||||| | |||||||||||| | || | ||||
Sbjct: 31 cggtggctggaccggttcgagtttattaaaagatcggccggtgcaacgacccgacaaaac 90
Query: 79 ccggtcgaccc 89
|||||||||||
Sbjct: 91 ccggtcgaccc 101
>52916_ptc-miRf11094-akr:pmrd
Length = 99
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 13 tcgacccggtggctggaccagtccgggttt 42
||||||||||||||||||| ||||||||||
Sbjct: 44 tcgacccggtggctggaccggtccgggttt 15
>54318_ptc-miRf12496-akr:pmrd
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
|||||| |||||||||||||| ||||||||||
Sbjct: 43 ggtcgatccggtggctggaccggtccgggttt 12
>54015_ptc-miRf12193-akr:pmrd
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 15 gacccggtggctggaccagtccgggttt 42
||||||||||||||||| ||||||||||
Sbjct: 39 gacccggtggctggaccggtccgggttt 12
>53405_ptc-miRf11583-akr:pmrd
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 15 gacccggtggctggaccagtccgggttt 42
||||||||||||||||| ||||||||||
Sbjct: 39 gacccggtggctggaccggtccgggttt 12
>53340_ptc-miRf11518-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
||||||||| ||||||||||| ||||||||||
Sbjct: 46 ggtcgacccagtggctggaccggtccgggttt 15
>53332_ptc-miRf11510-akr:pmrd
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
|||||| |||||||||||||| ||||||||||
Sbjct: 40 ggtcgatccggtggctggaccggtccgggttt 9
>52973_ptc-miRf11151-akr:pmrd
Length = 68
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
|||||||||||||| |||||| ||||||||||
Sbjct: 29 ggtcgacccggtggttggaccggtccgggttt 60
>52827_ptc-miRf11005-akr:pmrd
Length = 74
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 15 gacccggtggctggaccagtccgggttt 42
||||||||||||||||| ||||||||||
Sbjct: 39 gacccggtggctggaccggtccgggttt 12
>52772_ptc-miRf10950-akr:pmrd
Length = 62
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 15 gacccggtggctggaccagtccgggttt 42
||||||||||||||||| ||||||||||
Sbjct: 33 gacccggtggctggaccggtccgggttt 6
>52383_ptc-miRf10561-akr:pmrd
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
|||| |||||||||||||||| ||||||||||
Sbjct: 45 ggtcaacccggtggctggaccggtccgggttt 76
>52005_ptc-miRf10183-akr:pmrd
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
|||||||||||| |||||||| ||||||||||
Sbjct: 42 ggtcgacccggtagctggaccggtccgggttt 73
>53672_ptc-miRf11850-akr:pmrd
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 tcgacccggtggctggaccagtccgggttt 42
||||||| ||||||||||| ||||||||||
Sbjct: 35 tcgacccagtggctggaccggtccgggttt 6
>54338_ptc-miRf12516-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 21 gtggctggaccagtccgggtttgtcaaaagacc 53
||||||||||| || ||||||||| ||||||||
Sbjct: 61 gtggctggaccggttcgggtttgttaaaagacc 93
>53829_ptc-miRf12007-akr:pmrd
Length = 66
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 18 ccggtggctggaccagtccgggttt 42
|||||||||||||| ||||||||||
Sbjct: 30 ccggtggctggaccggtccgggttt 6
>52979_ptc-miRf11157-akr:pmrd
Length = 72
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 18 ccggtggctggaccagtccgggttt 42
|||||||||||||| ||||||||||
Sbjct: 40 ccggtggctggaccggtccgggttt 64
>53964_ptc-miRf12142-akr:pmrd
Length = 75
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 15 gacccggtggctggaccagtccgggttt 42
|||||||||||| |||| ||||||||||
Sbjct: 36 gacccggtggctagaccggtccgggttt 9
>53952_ptc-miRf12130-akr:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 15 gacccggtggctggaccagtccgggttt 42
||||||||||||||||| || |||||||
Sbjct: 36 gacccggtggctggaccggttcgggttt 9
>53131_ptc-miRf11309-akr:pmrd
Length = 56
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 15 gacccggtggctggaccagtccgggttt 42
|||| |||||||||||| ||||||||||
Sbjct: 33 gaccgggtggctggaccggtccgggttt 6
>52391_ptc-miRf10569-akr:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 9 cgggtcgacccggtggctggaccagtccgggt 40
|||||| || ||||||||||||| ||||||||
Sbjct: 7 cgggtcaacgcggtggctggaccggtccgggt 38
>52284_ptc-miRf10462-akr:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 11 ggtcgacccggtggctggaccagtccgggttt 42
|||| |||||||||||||||| ||| ||||||
Sbjct: 103 ggtcaacccggtggctggaccggtctgggttt 72
>52133_ptc-miRf10311-akr:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 37 gggtttgtcaaaagaccagccggtgcaacggcacggccaaacccggtcgacc 88
||||||||||||||||| | | ||||| | | |||| ||||||||||||||
Sbjct: 57 gggtttgtcaaaagaccggttgatgcaatgacccggcaaaacccggtcgacc 108
>52132_ptc-miRf10310-akr:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 37 gggtttgtcaaaagaccagccggtgcaacggcacggccaaacccggtcgacc 88
||||||||||||||||| | | ||||| | | |||| ||||||||||||||
Sbjct: 57 gggtttgtcaaaagaccggttgatgcaatgacccggcaaaacccggtcgacc 108
>51830_ptc-miRf10008-akr:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 15 gacccggtggctggaccagtccgggttt 42
|||| |||||||||||| ||||||||||
Sbjct: 43 gacctggtggctggaccggtccgggttt 70
