miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51843_ptc-miRf10021-akr:pmrd
Length = 113
Score = 87.7 bits (44), Expect = 3e-18
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 117 gtattgagtctagcatgcgtgccagacccacgctaccttggacttggtgcactgccaagt 176
|||||| |||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 106 gtattgggtctggcatgcgtgtcagacccacgcaaccttggacttggtgcattgccaagt 47
Query: 177 ccaa 180
||||
Sbjct: 46 ccaa 43
Score = 44.1 bits (22), Expect = 4e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 33 tccaagcgtattgagtttggcatgcgtgccagacccac 70
||||| ||||||| || ||||||||||| |||||||||
Sbjct: 113 tccaaacgtattgggtctggcatgcgtgtcagacccac 76
>51842_ptc-miRf10020-akr:pmrd
Length = 105
Score = 87.7 bits (44), Expect = 3e-18
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 117 gtattgagtctagcatgcgtgccagacccacgctaccttggacttggtgcactgccaagt 176
|||||| |||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 102 gtattgggtctggcatgcgtgtcagacccacgcaaccttggacttggtgcattgccaagt 43
Query: 177 ccaa 180
||||
Sbjct: 42 ccaa 39
Score = 40.1 bits (20), Expect = 6e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 39 cgtattgagtttggcatgcgtgccagacccac 70
||||||| || ||||||||||| |||||||||
Sbjct: 103 cgtattgggtctggcatgcgtgtcagacccac 72
>51841_ptc-miRf10019-akr:pmrd
Length = 92
Score = 81.8 bits (41), Expect = 2e-16
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 124 gtctagcatgcgtgccagacccacgctaccttggacttggtgcactgccaagtccaa 180
|||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 89 gtctggcatgcgtgtcagacccacgcaaccttggacttggtgcattgccaagtccaa 33
>52064_ptc-miRf10242-akr:pmrd
Length = 135
Score = 67.9 bits (34), Expect = 3e-12
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 47 gtttggcatgcgtgccagacccactttactttggactttacttggacttagctgacta 104
||||| |||||||||||||||||| |||| ||||||||| |||||| || ||||||||
Sbjct: 4 gtttgacatgcgtgccagacccacattaccttggactttgcttggaattggctgacta 61
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 130 catgcgtgccagacccacgctaccttggactt 161
|||||||||||||||||| ||||||||||||
Sbjct: 10 catgcgtgccagacccacattaccttggactt 41
Score = 48.1 bits (24), Expect = 2e-06
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 87 cttggacttagctgactatcaaacccaagtgtattgagtctagcatgcgtgccagaccca 146
|||| |||||||||||| ||| | |||| |||||| ||||||||||||| ||||||||
Sbjct: 76 cttgaacttagctgactgccaagcacaagcgtattgtatctagcatgcgtgtcagaccca 135
>52730_ptc-miRf10908-akr:pmrd
Length = 92
Score = 63.9 bits (32), Expect = 4e-11
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 124 gtctagcatgcgtgccagacccacgctaccttggacttggtgcactgccaagtccaagcg 183
||||| |||||||| || ||||||| || ||| ||||||||| ||||| |||||||||||
Sbjct: 4 gtctaacatgcgtgtcaaacccacgttatcttagacttggtgtactgctaagtccaagcg 63
Query: 184 tatt 187
||||
Sbjct: 64 tatt 67
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 30 aagtccaagcgtattgagtttggca 54
|||||||||||||||| ||||||||
Sbjct: 53 aagtccaagcgtattgggtttggca 77
>53886_ptc-miRf12064-akr:pmrd
Length = 111
Score = 61.9 bits (31), Expect = 2e-10
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 8 accttggacttggcagaccgccaagtccaagcgtattgagtttggcatgcgtgccagacc 67
||||||||||||||| | | |||||||||||| || ||| ||||||||||||||||||
Sbjct: 72 accttggacttggcaccctgtcaagtccaagcgcatggagcctggcatgcgtgccagacc 13
Query: 68 cac 70
|||
Sbjct: 12 cac 10
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 129 gcatgcgtgccagacccacgctac 152
||||||||||||||||||||||||
Sbjct: 28 gcatgcgtgccagacccacgctac 5
Score = 48.1 bits (24), Expect = 2e-06
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 112 caagtgtattgagtctagcatgcgtgccagacccacgctaccttggacttggtgcactgc 171
|||| |||||| || | |||||| || ||||||||| | ||||||||||||| | |||
Sbjct: 111 caagcgtattgggtttggcatgcatgtcagacccacaccaccttggacttggcaccctgt 52
Query: 172 caagtccaagcg 183
||||||||||||
Sbjct: 51 caagtccaagcg 40
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 35 caagcgtattgagtttggcatgcgtgccagacccac 70
||||||||||| ||||||||||| || |||||||||
Sbjct: 111 caagcgtattgggtttggcatgcatgtcagacccac 76
>52702_ptc-miRf10880-akr:pmrd
Length = 106
Score = 60.0 bits (30), Expect = 6e-10
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 124 gtctagcatgcgtgccagacccacgctaccttggacttggtgcactgccaagtccaagcg 183
|||| |||||||||||||||| | | ||||||||| ||| ||||||| |||||||||||
Sbjct: 96 gtctggcatgcgtgccagacctatgtcaccttggacctggcgcactgctaagtccaagcg 37
Query: 184 ta 185
||
Sbjct: 36 ta 35
Score = 44.1 bits (22), Expect = 4e-05
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 8 accttggacttggcagaccgccaagtccaagcgtattgagtttggcatgcgtgccagacc 67
||||||||| |||| || || ||||||||||||| || || || ||||||||| |||||
Sbjct: 69 accttggacctggcgcactgctaagtccaagcgtagtgggtctgtcatgcgtgctagacc 10
Query: 68 ca 69
||
Sbjct: 9 ca 8
>52961_ptc-miRf11139-akr:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 1e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 8 accttggacttggcagaccgccaagtccaagcgtattgagtttggcatgcgtgcca 63
||||||||||||||| | |||||||||||| || ||| || ||||||||||||||
Sbjct: 37 accttggacttggcatgctgccaagtccaagtgtcttgggtctggcatgcgtgcca 92
Score = 40.1 bits (20), Expect = 6e-04
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 118 tattgagtctagcatgcgtgccagacccacgctaccttggacttggtgcactgccaagtc 177
||||| |||| |||| | ||||||||| || |||||||||||||| ||||||||||
Sbjct: 4 tattgggtctggcatacatgccagaccaacattaccttggacttggcatgctgccaagtc 63
Query: 178 caag 181
||||
Sbjct: 64 caag 67
>52450_ptc-miRf10628-akr:pmrd
Length = 164
Score = 54.0 bits (27), Expect = 4e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 153 cttggacttggtgcactgccaagtccaagcgtattaggt 191
|||||||||||| |||||||||||||||||| ||||||
Sbjct: 1 cttggacttggttgactgccaagtccaagcgttttaggt 39
Score = 40.1 bits (20), Expect = 6e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 10 cttggacttggcagaccgccaagtccaagcgt 41
||||||||||| ||| |||||||||||||||
Sbjct: 1 cttggacttggttgactgccaagtccaagcgt 32
>53575_ptc-miRf11753-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 142 acccacgctaccttggacttggtgcactgccaagtc 177
|||||||||| |||||||||||||||| |||||||
Sbjct: 40 acccacgctatgttggacttggtgcactaccaagtc 5
>53199_ptc-miRf11377-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 142 acccacgctaccttggacttggtgcactgccaagtc 177
|||||||||| |||||||||||||||| |||||||
Sbjct: 40 acccacgctatgttggacttggtgcactaccaagtc 5
>52117_ptc-miRf10295-akr:pmrd
Length = 92
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 111 ccaagtgtattgagtctagcatgcgtgccagaccca 146
|||||||||||| ||||| ||| |||||||||||||
Sbjct: 36 ccaagtgtattgggtctaacatacgtgccagaccca 1
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 130 catgcgtgccagacccacgctaccttggac 159
|||||||||||||||||| | |||||||||
Sbjct: 83 catgcgtgccagacccacacgaccttggac 54
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 47 gtttggcatgcgtgccagacccac 70
||||| ||||||||||||||||||
Sbjct: 89 gtttgacatgcgtgccagacccac 66
>51892_ptc-miRf10070-akr:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 4e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 28 ccaagtccaagcgtattgagtttggcatgcgtgccaga 65
||||||||||||| |||| || ||||||| ||||||||
Sbjct: 50 ccaagtccaagcgcattgggtctggcatgagtgccaga 87
>53573_ptc-miRf11751-akr:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 14 gacttggcagaccgccaagtccaa 37
|||||||||||| |||||||||||
Sbjct: 28 gacttggcagacagccaagtccaa 5
