miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52618_ptc-miRf10796-akr:pmrd
Length = 122
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 97 agcattgggtcctaacgcaggacccat 123
|||||||||||||||||||||||||||
Sbjct: 47 agcattgggtcctaacgcaggacccat 73
Score = 52.0 bits (26), Expect = 1e-07
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 69 agcattgtgtcataactcaggacccattagcattgggtcctaacgcaggaccca 122
||||||| ||| |||| |||||||||||| |||||| ||||| ||||||||||
Sbjct: 47 agcattgggtcctaacgcaggacccattatcattggatcctagtgcaggaccca 100
>54314_ptc-miRf12492-akr:pmrd
Length = 113
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 101 ttgggtcctaacgcaggacccatgaaccttgggtcttg 138
||||||||| | ||||||||||| ||||||||||||||
Sbjct: 68 ttgggtcctcatgcaggacccatcaaccttgggtcttg 31
>54273_ptc-miRf12451-akr:pmrd
Length = 149
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 102 tgggtcctaacgcaggacccatgaaccttgggtc 135
|||||||||| ||||||||||| |||||||||||
Sbjct: 99 tgggtcctaatgcaggacccattaaccttgggtc 66
>52663_ptc-miRf10841-akr:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 7e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 86 caggacccattagcattgggtcctaacgcaggacc 120
|||||||||||||| |||||| || ||||||||||
Sbjct: 35 caggacccattagccttgggttctgacgcaggacc 1
Score = 46.1 bits (23), Expect = 7e-06
Identities = 72/87 (82%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 48 ggtcctaacgccggactcaaaagcattgtgtcataactcaggacccattagcattgggtc 107
|||||||||||||||| ||| || |||| ||| | || |||||||| | || ||||| ||
Sbjct: 100 ggtcctaacgccggacccaagagaattgggtcctgacacaggacccgtgagaattggttc 41
Query: 108 ctaacgcaggacccatgaaccttgggt 134
|| |||||||||||| | ||||||||
Sbjct: 40 ct-ccgcaggacccattagccttgggt 15
>52185_ptc-miRf10363-akr:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 7e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 86 caggacccattagcattgggtcctaacgcaggacc 120
|||||||||||||| |||||| || ||||||||||
Sbjct: 35 caggacccattagccttgggttctgacgcaggacc 1
Score = 46.1 bits (23), Expect = 7e-06
Identities = 72/87 (82%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 48 ggtcctaacgccggactcaaaagcattgtgtcataactcaggacccattagcattgggtc 107
|||||||||||||||| ||| || |||| ||| | || |||||||| | || ||||| ||
Sbjct: 100 ggtcctaacgccggacccaagagaattgggtcctgacacaggacccgtgagaattggttc 41
Query: 108 ctaacgcaggacccatgaaccttgggt 134
|| |||||||||||| | ||||||||
Sbjct: 40 ct-ccgcaggacccattagccttgggt 15
>53297_ptc-miRf11475-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 86 caggacccattagcattgggtcctaacgcaggaccca 122
|||||||||||| | ||||||||| ||||| ||||||
Sbjct: 40 caggacccattacccttgggtcctgacgcaagaccca 4
>53296_ptc-miRf11474-akr:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 86 caggacccattagcattgggtcctaacgcaggaccca 122
|||||||||||| | ||||||||| ||||| ||||||
Sbjct: 86 caggacccattacccttgggtcctgacgcaagaccca 50
>52529_ptc-miRf10707-akr:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 86 caggacccattagcattgggtcctaacgcaggaccca 122
|||||||||||| | ||||||||| ||||| ||||||
Sbjct: 3 caggacccattacccttgggtcctgacgcaagaccca 39
>52241_ptc-miRf10419-akr:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 86 caggacccattagcattgggtcctaacgcaggaccca 122
|||||||||||| | ||||||||| ||||| ||||||
Sbjct: 3 caggacccattacccttgggtcctgacgcaagaccca 39
>52240_ptc-miRf10418-akr:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 86 caggacccattagcattgggtcctaacgcaggaccca 122
|||||||||||| | ||||||||| ||||| ||||||
Sbjct: 3 caggacccattacccttgggtcctgacgcaagaccca 39
>53264_ptc-miRf11442-akr:pmrd
Length = 129
Score = 40.1 bits (20), Expect = 4e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 87 aggacccattagcattgggtcctaacgcaggaccca 122
||||||||||||| |||| |||| ||||| ||||||
Sbjct: 48 aggacccattagccttggatcctgacgcatgaccca 13
>53244_ptc-miRf11422-akr:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 89 gacccattagcattgggtcctaacgcaggacc 120
||||||| || |||||||||||||||| ||||
Sbjct: 42 gacccatcagaattgggtcctaacgcaagacc 11
>52123_ptc-miRf10301-akr:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 86 caggacccattagcattgggtcctaacg 113
|||||||||||||| |||||| ||||||
Sbjct: 28 caggacccattagccttgggttctaacg 1
>52038_ptc-miRf10216-akr:pmrd
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 101 ttgggtcctaacgcaggacccatg 124
||||||| ||||||||||||||||
Sbjct: 66 ttgggtcttaacgcaggacccatg 43
>51910_ptc-miRf10088-akr:pmrd
Length = 88
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 101 ttgggtcctaacgcaggacccatgaaccttgg 132
|||||||||||| | |||||||| ||||||||
Sbjct: 69 ttgggtcctaacactggacccattaaccttgg 38
