miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53521_ptc-miRf11699-akr:pmrd
Length = 146
Score = 289 bits (146), Expect = 3e-79
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 1 aatattttaccaatgttgggattggtatcgagacatgcttaatacttaccaatgttgcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatattttaccaatgttgggattggtatcgagacatgcttaatacttaccaatgttgcta 60
Query: 61 acttaccaatctccatgtttccaaaaccatgatgaaggcaagtattaagcaagtctcgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acttaccaatctccatgtttccaaaaccatgatgaaggcaagtattaagcaagtctcgat 120
Query: 121 atgtatcccaacattgataaactgtt 146
||||||||||||||||||||||||||
Sbjct: 121 atgtatcccaacattgataaactgtt 146
Score = 44.1 bits (22), Expect = 3e-05
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 100 aagtattaagcaagtctcgatatgtatcccaacattgataaa 141
|||||||||||| ||||||||| |||||||||||| ||||
Sbjct: 47 aagtattaagcatgtctcgataccaatcccaacattggtaaa 6
Score = 44.1 bits (22), Expect = 3e-05
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 6 tttaccaatgttgggattggtatcgagacatgcttaatactt 47
|||| |||||||||||| ||||||||| ||||||||||||
Sbjct: 141 tttatcaatgttgggatacatatcgagacttgcttaatactt 100
>53510_ptc-miRf11688-akr:pmrd
Length = 146
Score = 289 bits (146), Expect = 3e-79
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 1 aatattttaccaatgttgggattggtatcgagacatgcttaatacttaccaatgttgcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatattttaccaatgttgggattggtatcgagacatgcttaatacttaccaatgttgcta 60
Query: 61 acttaccaatctccatgtttccaaaaccatgatgaaggcaagtattaagcaagtctcgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acttaccaatctccatgtttccaaaaccatgatgaaggcaagtattaagcaagtctcgat 120
Query: 121 atgtatcccaacattgataaactgtt 146
||||||||||||||||||||||||||
Sbjct: 121 atgtatcccaacattgataaactgtt 146
Score = 44.1 bits (22), Expect = 3e-05
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 100 aagtattaagcaagtctcgatatgtatcccaacattgataaa 141
|||||||||||| ||||||||| |||||||||||| ||||
Sbjct: 47 aagtattaagcatgtctcgataccaatcccaacattggtaaa 6
Score = 44.1 bits (22), Expect = 3e-05
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 6 tttaccaatgttgggattggtatcgagacatgcttaatactt 47
|||| |||||||||||| ||||||||| ||||||||||||
Sbjct: 141 tttatcaatgttgggatacatatcgagacttgcttaatactt 100
>52204_ptc-miRf10382-akr:pmrd
Length = 146
Score = 289 bits (146), Expect = 3e-79
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 1 aatattttaccaatgttgggattggtatcgagacatgcttaatacttaccaatgttgcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatattttaccaatgttgggattggtatcgagacatgcttaatacttaccaatgttgcta 60
Query: 61 acttaccaatctccatgtttccaaaaccatgatgaaggcaagtattaagcaagtctcgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acttaccaatctccatgtttccaaaaccatgatgaaggcaagtattaagcaagtctcgat 120
Query: 121 atgtatcccaacattgataaactgtt 146
||||||||||||||||||||||||||
Sbjct: 121 atgtatcccaacattgataaactgtt 146
Score = 44.1 bits (22), Expect = 3e-05
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 100 aagtattaagcaagtctcgatatgtatcccaacattgataaa 141
|||||||||||| ||||||||| |||||||||||| ||||
Sbjct: 47 aagtattaagcatgtctcgataccaatcccaacattggtaaa 6
Score = 44.1 bits (22), Expect = 3e-05
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 6 tttaccaatgttgggattggtatcgagacatgcttaatactt 47
|||| |||||||||||| ||||||||| ||||||||||||
Sbjct: 141 tttatcaatgttgggatacatatcgagacttgcttaatactt 100
>52635_ptc-miRf10813-akr:pmrd
Length = 134
Score = 266 bits (134), Expect = 4e-72
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 7 ttaccaatgttgggattggtatcgagacatgcttaatacttaccaatgttgctaacttac 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ttaccaatgttgggattggtatcgagacatgcttaatacttaccaatgttgctaacttac 75
Query: 67 caatctccatgtttccaaaaccatgatgaaggcaagtattaagcaagtctcgatatgtat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 caatctccatgtttccaaaaccatgatgaaggcaagtattaagcaagtctcgatatgtat 15
Query: 127 cccaacattgataa 140
||||||||||||||
Sbjct: 14 cccaacattgataa 1
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 11 caatgttgggattggtatcgagacatgcttaatactt 47
|||||||||||| ||||||||| ||||||||||||
Sbjct: 5 caatgttgggatacatatcgagacttgcttaatactt 41
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 100 aagtattaagcaagtctcgatatgtatcccaacattg 136
|||||||||||| ||||||||| ||||||||||||
Sbjct: 94 aagtattaagcatgtctcgataccaatcccaacattg 130
>52627_ptc-miRf10805-akr:pmrd
Length = 134
Score = 266 bits (134), Expect = 4e-72
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 7 ttaccaatgttgggattggtatcgagacatgcttaatacttaccaatgttgctaacttac 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ttaccaatgttgggattggtatcgagacatgcttaatacttaccaatgttgctaacttac 75
Query: 67 caatctccatgtttccaaaaccatgatgaaggcaagtattaagcaagtctcgatatgtat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 caatctccatgtttccaaaaccatgatgaaggcaagtattaagcaagtctcgatatgtat 15
Query: 127 cccaacattgataa 140
||||||||||||||
Sbjct: 14 cccaacattgataa 1
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 11 caatgttgggattggtatcgagacatgcttaatactt 47
|||||||||||| ||||||||| ||||||||||||
Sbjct: 5 caatgttgggatacatatcgagacttgcttaatactt 41
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 100 aagtattaagcaagtctcgatatgtatcccaacattg 136
|||||||||||| ||||||||| ||||||||||||
Sbjct: 94 aagtattaagcatgtctcgataccaatcccaacattg 130
>52636_ptc-miRf10814-akr:pmrd
Length = 120
Score = 238 bits (120), Expect = 9e-64
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 14 tgttgggattggtatcgagacatgcttaatacttaccaatgttgctaacttaccaatctc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tgttgggattggtatcgagacatgcttaatacttaccaatgttgctaacttaccaatctc 61
Query: 74 catgtttccaaaaccatgatgaaggcaagtattaagcaagtctcgatatgtatcccaaca 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 catgtttccaaaaccatgatgaaggcaagtattaagcaagtctcgatatgtatcccaaca 1
>52628_ptc-miRf10806-akr:pmrd
Length = 120
Score = 238 bits (120), Expect = 9e-64
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 14 tgttgggattggtatcgagacatgcttaatacttaccaatgttgctaacttaccaatctc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tgttgggattggtatcgagacatgcttaatacttaccaatgttgctaacttaccaatctc 61
Query: 74 catgtttccaaaaccatgatgaaggcaagtattaagcaagtctcgatatgtatcccaaca 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 catgtttccaaaaccatgatgaaggcaagtattaagcaagtctcgatatgtatcccaaca 1
>52214_ptc-miRf10392-akr:pmrd
Length = 112
Score = 222 bits (112), Expect = 6e-59
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 18 gggattggtatcgagacatgcttaatacttaccaatgttgctaacttaccaatctccatg 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggattggtatcgagacatgcttaatacttaccaatgttgctaacttaccaatctccatg 60
Query: 78 tttccaaaaccatgatgaaggcaagtattaagcaagtctcgatatgtatccc 129
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttccaaaaccatgatgaaggcaagtattaagcaagtctcgatatgtatccc 112
>52203_ptc-miRf10381-akr:pmrd
Length = 112
Score = 222 bits (112), Expect = 6e-59
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 18 gggattggtatcgagacatgcttaatacttaccaatgttgctaacttaccaatctccatg 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggattggtatcgagacatgcttaatacttaccaatgttgctaacttaccaatctccatg 60
Query: 78 tttccaaaaccatgatgaaggcaagtattaagcaagtctcgatatgtatccc 129
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttccaaaaccatgatgaaggcaagtattaagcaagtctcgatatgtatccc 112
