miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00097;snoR71;AARH01033720.1/381-273 3694:Populus trichocarpa
Length = 109
Score = 85.7 bits (43), Expect = 2e-16
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 84 aaaccatgatgaaggcaagtattaagcaagtctcgatatgtatcccaacattgataaact 143
||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct: 1 aaaccatgatgggggcaagtattaagcaagtctcgatatctatcccaacattggtaaaat 60
Query: 144 gtt 146
|||
Sbjct: 61 gtt 63
Score = 63.9 bits (32), Expect = 6e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 4 attttaccaatgttgggattggtatcgagacatgcttaatactt 47
||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 60 attttaccaatgttgggatagatatcgagacttgcttaatactt 17
>RF00097;snoR71;AARH01001277.1/87421-87310 3694:Populus trichocarpa
Length = 112
Score = 79.8 bits (40), Expect = 9e-15
Identities = 59/64 (92%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 84 aaaccatgatgaaggcaa-gtattaagcaagtctcgatatgtatcccaacattgataaac 142
|||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 aaaccatgatgagggcaaagtattaagcaagtctcgatacctatcccaacattgataaaa 60
Query: 143 tgtt 146
||||
Sbjct: 61 tgtt 64
Score = 63.9 bits (32), Expect = 6e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 4 attttaccaatgttgggattggtatcgagacatgcttaatactt 47
|||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 61 attttatcaatgttgggataggtatcgagacttgcttaatactt 18
>RF00097;snoR71;AARH01001422.1/144978-144872 3694:Populus
trichocarpa
Length = 107
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 4 attttaccaatgttgggattggtatcgagacatgcttaa 42
||||||||||||||||||| ||||||| ||| |||||||
Sbjct: 58 attttaccaatgttgggataggtatcgggacttgcttaa 20
Score = 46.1 bits (23), Expect = 1e-04
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 88 catgatgaaggcaagtattaagcaagtctcgatatgtatcccaacattgataaactgtt 146
|||| ||| ||||||| ||||||||||| ||||| ||||||||||||| |||| ||||
Sbjct: 4 catggtgagggcaagt-ttaagcaagtcccgatacctatcccaacattggtaaaatgtt 61
>RF00097;snoR71;AC216769.1/73785-73677 3694:Populus trichocarpa
Length = 109
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 84 aaaccatgatgaaggcaagtattaagcaagtctcgatatgtatcccaaca 133
|||||||||||| | || ||||||||||||||| |||| ||||||||||
Sbjct: 1 aaaccatgatgaggacaggtattaagcaagtctttatatctatcccaaca 50
