miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53891_ptc-miRf12069-akr:pmrd
Length = 95
Score = 60.0 bits (30), Expect = 5e-10
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 4 gtggcaggagcgcagacccagttctcttgggtcttgcagccccacttggcccaa 57
|||||| ||||||||||||| || |||||||||||||||||| | ||||||||
Sbjct: 55 gtggcaagagcgcagacccaagtcacttgggtcttgcagcccctcctggcccaa 2
>52755_ptc-miRf10933-akr:pmrd
Length = 74
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 111 cccaagagcgttgggtctggctgcaact 138
||||||||||||||||||||||||||||
Sbjct: 47 cccaagagcgttgggtctggctgcaact 74
>52461_ptc-miRf10639-akr:pmrd
Length = 132
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 111 cccaagagcgttgggtctggctgcaact 138
||||||||||||||||||||||||||||
Sbjct: 123 cccaagagcgttgggtctggctgcaact 96
>52288_ptc-miRf10466-akr:pmrd
Length = 100
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 111 cccaagagcgttgggtctggctgcaact 138
||||||||||||||||||||||||||||
Sbjct: 41 cccaagagcgttgggtctggctgcaact 14
>53969_ptc-miRf12147-akr:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 111 cccaagagcgttgggtctggctgca 135
|||||||||||||||||||||||||
Sbjct: 25 cccaagagcgttgggtctggctgca 1
>52152_ptc-miRf10330-akr:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 112 ccaagagcgttgggtctggctgcaac 137
|||||||| |||||||||||||||||
Sbjct: 74 ccaagagccttgggtctggctgcaac 99
>54158_ptc-miRf12336-akr:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 agacccagttctcttgggtcttgca 41
|||||||||||||||||||| ||||
Sbjct: 5 agacccagttctcttgggtcctgca 29
>53110_ptc-miRf11288-akr:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 agacccagttctcttgggtcttgca 41
|||||||||||||||||||| ||||
Sbjct: 5 agacccagttctcttgggtcctgca 29
>53108_ptc-miRf11286-akr:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 agacccagttctcttgggtcttgca 41
|||||||||||||||||||| ||||
Sbjct: 5 agacccagttctcttgggtcctgca 29
>51990_ptc-miRf10168-akr:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 105 gctagacccaagagcgttgggtctggctg 133
||||||||||||| || ||||||||||||
Sbjct: 36 gctagacccaagatcgatgggtctggctg 64
>53244_ptc-miRf11422-akr:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 17 agacccagttctcttgggtcttgc 40
||||||||| ||||||||||||||
Sbjct: 82 agacccagtcctcttgggtcttgc 105
