miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00779;MIR474;AARH01025875.1/2555-2453 3694:Populus trichocarpa
Length = 103
Score = 167 bits (84), Expect = 5e-41
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 57 atacactaggagcaggcgtctaaacccaagcttaggtttgcctgcagtgctagacccaag 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 atacactaggagcaggcgtctaaacccaagcttaggtttgcctgcagtgctagacccaag 44
Query: 117 agcgttgggtctggctgcaacttc 140
||||||||||||||||||||||||
Sbjct: 43 agcgttgggtctggctgcaacttc 20
>RF00779;MIR474;AARH01004701.1/71018-70904 3694:Populus trichocarpa
Length = 115
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 110 acccaagagcgttgggtctggctgcaact 138
|||||||||||||||||||||||||||||
Sbjct: 49 acccaagagcgttgggtctggctgcaact 21
>RF00779;MIR474;AARH01006732.1/221604-221489 3694:Populus
trichocarpa
Length = 116
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 111 cccaagagcgttgggtctggctgcaact 138
||||||||||||||||||||||||||||
Sbjct: 48 cccaagagcgttgggtctggctgcaact 21
>RF00779;MIR474;AC216460.1/36938-36832 3694:Populus trichocarpa
Length = 107
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 84 aagcttaggtttgcctgcagtgctagacccaagagcgttgggtctggctg 133
|||||| ||| || ||||| ||| |||||||||||||||| |||||||||
Sbjct: 75 aagcttgggtctggctgcaatgccagacccaagagcgttgagtctggctg 26
>RF00779;MIR474;AARH01006763.1/58962-58878 3694:Populus trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 105 gctagacccaagagcgttgggtctggc 131
||||||||||| |||||||||||||||
Sbjct: 57 gctagacccaatagcgttgggtctggc 31
>RF00779;MIR474;AARH01017174.1/1000-918 3694:Populus trichocarpa
Length = 83
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 108 agacccaagagcgttgggtctggctgcaac 137
|||||||||||| ||| |||||||||||||
Sbjct: 50 agacccaagagccttgagtctggctgcaac 21
