miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52391_ptc-miRf10569-akr:pmrd
Length = 111
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 28 ggtggctggaccggtccggataagacaaaagac 60
||||||||||||||||||| |||||||||||||
Sbjct: 18 ggtggctggaccggtccgggtaagacaaaagac 50
>51830_ptc-miRf10008-akr:pmrd
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 gacctggtggctggaccggtccgg 46
||||||||||||||||||||||||
Sbjct: 43 gacctggtggctggaccggtccgg 66
>54232_ptc-miRf12410-akr:pmrd
Length = 78
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 12 gggacttgttcgacctggtggctggaccggtccgg 46
|||||| | |||||| |||||||||||||||||||
Sbjct: 44 gggactcggtcgacccggtggctggaccggtccgg 10
>54357_ptc-miRf12535-akr:pmrd
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 41 tcgacccggtggctggaccggtccgg 16
>54259_ptc-miRf12437-akr:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 44 tcgacccggtggctggaccggtccgg 19
>54062_ptc-miRf12240-akr:pmrd
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 35 tcgacccggtggctggaccggtccgg 10
>54046_ptc-miRf12224-akr:pmrd
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 44 tcgacccggtggctggaccggtccgg 19
>53956_ptc-miRf12134-akr:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 41 tcgacccggtggctggaccggtccgg 16
>53888_ptc-miRf12066-akr:pmrd
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 35 tcgacccggtggctggaccggtccgg 10
>53858_ptc-miRf12036-akr:pmrd
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 42 tcgacccggtggctggaccggtccgg 17
>53790_ptc-miRf11968-akr:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 41 tcgacccggtggctggaccggtccgg 16
>53728_ptc-miRf11906-akr:pmrd
Length = 62
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 35 tcgacccggtggctggaccggtccgg 10
>53720_ptc-miRf11898-akr:pmrd
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 35 tcgacccggtggctggaccggtccgg 10
>53671_ptc-miRf11849-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 41 tcgacccggtggctggaccggtccgg 16
>53648_ptc-miRf11826-akr:pmrd
Length = 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 35 tcgacccggtggctggaccggtccgg 60
>53618_ptc-miRf11796-akr:pmrd
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 38 tcgacccggtggctggaccggtccgg 63
>53498_ptc-miRf11676-akr:pmrd
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 44 tcgacccggtggctggaccggtccgg 19
>53383_ptc-miRf11561-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 44 tcgacccggtggctggaccggtccgg 19
>53352_ptc-miRf11530-akr:pmrd
Length = 75
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 41 tcgacccggtggctggaccggtccgg 16
>53350_ptc-miRf11528-akr:pmrd
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 35 tcgacccggtggctggaccggtccgg 10
>53249_ptc-miRf11427-akr:pmrd
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 41 tcgacccggtggctggaccggtccgg 16
>53068_ptc-miRf11246-akr:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 41 tcgacccggtggctggaccggtccgg 16
>53000_ptc-miRf11178-akr:pmrd
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 35 tcgacccggtggctggaccggtccgg 10
>52986_ptc-miRf11164-akr:pmrd
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 35 tcgacccggtggctggaccggtccgg 10
>52971_ptc-miRf11149-akr:pmrd
Length = 68
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 31 tcgacccggtggctggaccggtccgg 56
>52967_ptc-miRf11145-akr:pmrd
Length = 62
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 35 tcgacccggtggctggaccggtccgg 10
>52951_ptc-miRf11129-akr:pmrd
Length = 62
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 35 tcgacccggtggctggaccggtccgg 10
>52916_ptc-miRf11094-akr:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 44 tcgacccggtggctggaccggtccgg 19
>52796_ptc-miRf10974-akr:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 45 tcgacccggtggctggaccggtccgg 20
>52447_ptc-miRf10625-akr:pmrd
Length = 128
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 33 ctggaccggtccggataagacaaaagaccg 62
|||||||| ||||| |||||||||||||||
Sbjct: 48 ctggaccgatccgggtaagacaaaagaccg 77
>52253_ptc-miRf10431-akr:pmrd
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 tcgacctggtggctggaccggtccgg 46
|||||| |||||||||||||||||||
Sbjct: 45 tcgacccggtggctggaccggtccgg 70
>54015_ptc-miRf12193-akr:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 23 gacctggtggctggaccggtccgg 46
|||| |||||||||||||||||||
Sbjct: 39 gacccggtggctggaccggtccgg 16
>53405_ptc-miRf11583-akr:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 23 gacctggtggctggaccggtccgg 46
|||| |||||||||||||||||||
Sbjct: 39 gacccggtggctggaccggtccgg 16
>53131_ptc-miRf11309-akr:pmrd
Length = 56
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 23 gacctggtggctggaccggtccgg 46
|||| |||||||||||||||||||
Sbjct: 33 gaccgggtggctggaccggtccgg 10
>52827_ptc-miRf11005-akr:pmrd
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 23 gacctggtggctggaccggtccgg 46
|||| |||||||||||||||||||
Sbjct: 39 gacccggtggctggaccggtccgg 16
>52772_ptc-miRf10950-akr:pmrd
Length = 62
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 23 gacctggtggctggaccggtccgg 46
|||| |||||||||||||||||||
Sbjct: 33 gacccggtggctggaccggtccgg 10
