miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51768_ptc-miR474b:pmrd
Length = 107
Score = 111 bits (56), Expect = 9e-26
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 38 ttcaaaagttgttgggtttggctgggcagccagatccagtgctattgggtcctgtt 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcaaaagttgttgggtttggctgggcagccagatccagtgctattgggtcctgtt 56
>52915_ptc-miRf11093-akr:pmrd
Length = 92
Score = 63.9 bits (32), Expect = 2e-11
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 32 aagaagttcaaaagttgttgggtttggctgggcagccagatccagtgctattgggt 87
||||||| ||||||||| ||||||||||||||||| | || ||| |||||||||||
Sbjct: 32 aagaagtccaaaagttgctgggtttggctgggcaggcggacccaatgctattgggt 87
>51927_ptc-miRf10105-akr:pmrd
Length = 92
Score = 63.9 bits (32), Expect = 2e-11
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 32 aagaagttcaaaagttgttgggtttggctgggcagccagatccagtgctattgggt 87
||||||| ||||||||| ||||||||||||||||| | || ||| |||||||||||
Sbjct: 32 aagaagtccaaaagttgctgggtttggctgggcaggcggacccaatgctattgggt 87
>52230_ptc-miRf10408-akr:pmrd
Length = 137
Score = 60.0 bits (30), Expect = 3e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 10 aatagcattcggtctggcggttaagaagttcaaaagttgttgggtttggctggg 63
|||||| || |||||||||| |||||||||||||| |||||||||| ||||||
Sbjct: 34 aatagccttgggtctggcggccaagaagttcaaaagatgttgggtttagctggg 87
>52015_ptc-miRf10193-akr:pmrd
Length = 137
Score = 60.0 bits (30), Expect = 3e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 10 aatagcattcggtctggcggttaagaagttcaaaagttgttgggtttggctggg 63
|||||| || |||||||||| |||||||||||||| |||||||||| ||||||
Sbjct: 34 aatagccttgggtctggcggccaagaagttcaaaagatgttgggtttagctggg 87
>51767_ptc-miR474a:pmrd
Length = 104
Score = 56.0 bits (28), Expect = 5e-09
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 40 caaaagttgttgggtttggctgggcagccagatccagtgctattgggt 87
||||||||| ||||||||||||||||| | || ||| |||||||||||
Sbjct: 3 caaaagttgctgggtttggctgggcaggcggacccaatgctattgggt 50
>51769_ptc-miR474c:pmrd
Length = 75
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 35 aagttcaaaagttgttgggtttggctgggcagc 67
|||| |||||| |||||||||||||||||||||
Sbjct: 42 aagtgcaaaagctgttgggtttggctgggcagc 74
>54265_ptc-miRf12443-akr:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 47 tgttgggtttggctgggcagccagatcca 75
|||||||| ||||||| ||||||||||||
Sbjct: 54 tgttgggtctggctggtcagccagatcca 82
>52773_ptc-miRf10951-akr:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 47 tgttgggtttggctgggcagccagatcca 75
|||||||| ||||||| ||||||||||||
Sbjct: 54 tgttgggtctggctggtcagccagatcca 82
