miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51868_ptc-miRf10046-akr:pmrd
Length = 97
Score = 95.6 bits (48), Expect = 9e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 68 gtttgaacctgtttttgtcctaaaaaaccgaaccgaaaccagccggtttgaaccggtttt 127
||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 33 gtttgaaccggtttttgtcctaaaaaaccgaaccgaacccggccggtttgaaccggtttc 92
Query: 128 ggtt 131
||||
Sbjct: 93 ggtt 96
>53838_ptc-miRf12016-akr:pmrd
Length = 127
Score = 77.8 bits (39), Expect = 2e-15
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 80 ttttgtcctaaaaaaccgaaccgaaaccagccggtttgaaccggttttggttcggtttc 138
|||| ||||||||||| |||||||||| || |||||||||||||||| |||||||||||
Sbjct: 62 ttttttcctaaaaaactgaaccgaaactagtcggtttgaaccggtttcggttcggtttc 4
>53947_ptc-miRf12125-akr:pmrd
Length = 75
Score = 75.8 bits (38), Expect = 8e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 93 aaccgaaccgaaaccagccggtttgaaccggttttggttcggtttc 138
||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 16 aaccgaaccgaaaccagtcggtttgaaccggtttcggttcggtttc 61
>51831_ptc-miRf10009-akr:pmrd
Length = 99
Score = 69.9 bits (35), Expect = 5e-13
Identities = 69/79 (87%), Gaps = 6/79 (7%)
Strand = Plus / Plus
Query: 67 ggtttgaacctgtttttgtcctaaaaaaccgaaccgaa-----accagccggtttgaacc 121
|||||||||||||||| ||||||||||||||||||||| ||| | ||||||||||
Sbjct: 22 ggtttgaacctgtttt-gtcctaaaaaaccgaaccgaactgaaaccggttggtttgaacc 80
Query: 122 ggttttggttcggtttcag 140
||||| |||||||||||||
Sbjct: 81 ggtttcggttcggtttcag 99
>52338_ptc-miRf10516-akr:pmrd
Length = 136
Score = 65.9 bits (33), Expect = 8e-12
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 67 ggtttgaacctgtttttgtcctaaaa-aaccgaaccgaaaccagccggtttgaaccggtt 125
||||||||| |||||||| |||||| ||||||||||||||| | |||||||||||||||
Sbjct: 66 ggtttgaacaagtttttgttctaaaataaccgaaccgaaaccggtcggtttgaaccggtt 125
Query: 126 t 126
|
Sbjct: 126 t 126
>53113_ptc-miRf11291-akr:pmrd
Length = 77
Score = 63.9 bits (32), Expect = 3e-11
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 71 tgaacctgtttttgtcctaaaaaaccgaaccgaaaccagccggtttgaaccggttt 126
|||||| ||||| |||||||||||||||||||||||| |||||||| |||||||
Sbjct: 57 tgaaccggttttggtcctaaaaaaccgaaccgaaaccgatcggtttgacccggttt 2
>52625_ptc-miRf10803-akr:pmrd
Length = 108
Score = 63.9 bits (32), Expect = 3e-11
Identities = 65/76 (85%), Gaps = 5/76 (6%)
Strand = Plus / Plus
Query: 67 ggtttgaacctgtttttgtcctaaaaaaccgaaccg-----aaaccagccggtttgaacc 121
||||||||| |||||| |||||||||||||||||| ||||| | |||||||||||
Sbjct: 26 ggtttgaactggtttttatcctaaaaaaccgaaccggaccgaaaccggtcggtttgaacc 85
Query: 122 ggttttggttcggttt 137
||||| ||||||||||
Sbjct: 86 ggtttcggttcggttt 101
>52886_ptc-miRf11064-akr:pmrd
Length = 144
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 70 ttgaacctgtttttgtcctaaaaaaccgaaccgaa 104
||||||| |||||||||||||||||||||||||||
Sbjct: 57 ttgaaccggtttttgtcctaaaaaaccgaaccgaa 23
>53731_ptc-miRf11909-akr:pmrd
Length = 74
Score = 60.0 bits (30), Expect = 5e-10
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 93 aaccgaaccgaaaccagccggtttgaaccggttttggttcggtttc 138
|||||||||||||| | |||||||||||||||| |||||||||||
Sbjct: 16 aaccgaaccgaaactggtcggtttgaaccggtttcggttcggtttc 61
>53395_ptc-miRf11573-akr:pmrd
Length = 74
Score = 60.0 bits (30), Expect = 5e-10
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 93 aaccgaaccgaaaccagccggtttgaaccggttttggttcggtttc 138
|||||||||||||| | |||||||||||||||| |||||||||||
Sbjct: 16 aaccgaaccgaaactggtcggtttgaaccggtttcggttcggtttc 61
>53823_ptc-miRf12001-akr:pmrd
Length = 124
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 99 accgaaaccagccggtttgaaccggttttggttcggtttc 138
||||||||||| |||||||| ||||||| |||||||||||
Sbjct: 46 accgaaaccagtcggtttgacccggtttcggttcggtttc 7
>54327_ptc-miRf12505-akr:pmrd
Length = 143
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 67 ggtttgaacctgtttttgtcctaaaaaacc 96
|||||||||| |||||||||||||||||||
Sbjct: 13 ggtttgaaccggtttttgtcctaaaaaacc 42
>53432_ptc-miRf11610-akr:pmrd
Length = 82
Score = 52.0 bits (26), Expect = 1e-07
Identities = 57/66 (86%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 67 ggtttgaacctgtttttgtcctaaaa-aaccgaaccgaaaccagccggtttgaaccggtt 125
||||||||| |||||||| |||||| ||| ||||||||||| | ||||||||||| |||
Sbjct: 16 ggtttgaactggtttttgttctaaaataactgaaccgaaaccggtcggtttgaaccagtt 75
Query: 126 ttggtt 131
| ||||
Sbjct: 76 tcggtt 81
>53654_ptc-miRf11832-akr:pmrd
Length = 123
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 111 cggtttgaaccggttttggttcggtttc 138
|||||||||||||||| |||||||||||
Sbjct: 29 cggtttgaaccggtttcggttcggtttc 2
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 68 gtttgaacctgtttttgtcctaaaaaac 95
||||||||| ||||||||||||||||||
Sbjct: 65 gtttgaaccggtttttgtcctaaaaaac 38
>51851_ptc-miRf10029-akr:pmrd
Length = 79
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 68 gtttgaacctgtttttgtcctaaaaaac 95
||||||||| ||||||||||||||||||
Sbjct: 17 gtttgaaccggtttttgtcctaaaaaac 44
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 111 cggtttgaaccggttttggttcggttt 137
|||||||||||||||| ||||||||||
Sbjct: 53 cggtttgaaccggtttcggttcggttt 79
>52930_ptc-miRf11108-akr:pmrd
Length = 79
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 112 ggtttgaaccggttttggttcggtttc 138
||||||||||||||| |||||||||||
Sbjct: 45 ggtttgaaccggtttcggttcggtttc 71
>54220_ptc-miRf12398-akr:pmrd
Length = 69
Score = 44.1 bits (22), Expect = 3e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 93 aaccgaaccgaaaccagccggtttgaaccggttttggttcgg 134
|||||||||||||| | |||||||| ||||||| |||||||
Sbjct: 13 aaccgaaccgaaactggtcggtttgacccggtttcggttcgg 54
>53849_ptc-miRf12027-akr:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 95 ccgaaccgaaaccagccggtttgaaccggttttggttc 132
||||||||||||| | |||||||||| |||||| ||||
Sbjct: 1 ccgaaccgaaaccggtcggtttgaactggtttttgttc 38
>53625_ptc-miRf11803-akr:pmrd
Length = 152
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 92 aaaccgaaccgaaaccagccggtttgaacc 121
|||||||||||||||| | |||||||||||
Sbjct: 30 aaaccgaaccgaaaccggtcggtttgaacc 1
>53966_ptc-miRf12144-akr:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 1e-04
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 93 aaccgaaccgaaaccagccggtttgaaccggtttt-ggttcggtt 136
||||||||||||| | ||||||||||||||||| |||||||||
Sbjct: 17 aaccgaaccgaaattaatcggtttgaaccggttttcggttcggtt 61
